Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0394.Seq
(797 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U82010-1|AAC51330.1| 443|Homo sapiens heme A: farnesyltransfera... 42 0.003
U09466-1|AAA21148.1| 443|Homo sapiens heme A:farnesyltransferas... 42 0.003
BT006985-1|AAP35631.1| 443|Homo sapiens COX10 homolog, cytochro... 42 0.003
BC006394-1|AAH06394.1| 443|Homo sapiens COX10 homolog, cytochro... 42 0.003
BC000060-1|AAH00060.1| 443|Homo sapiens COX10 homolog, cytochro... 42 0.003
L25851-1|AAB59359.2| 1179|Homo sapiens integrin alpha E precurso... 31 4.8
BC117207-1|AAI17208.1| 1179|Homo sapiens integrin, alpha E (anti... 31 4.8
BC113436-1|AAI13437.1| 1179|Homo sapiens integrin, alpha E (anti... 31 4.8
AF168787-6|AAF43107.1| 1127|Homo sapiens HUMINAE protein. 31 4.8
>U82010-1|AAC51330.1| 443|Homo sapiens heme A: farnesyltransferase
protein.
Length = 443
Score = 41.5 bits (93), Expect = 0.003
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +3
Query: 246 PASARISTAQNWRSKVPLKTQTTATVK---NKVTQDTRVWKETPS--YDRKSNTGQYCLM 410
P S +S N + + L+ + K T++ + WKE YD Q
Sbjct: 104 PPSLSLSRKPNEKELIELEPDSVIEDSIDVGKETKEEKRWKEMKLQVYDLPGILAQ---- 159
Query: 411 LSKSRLTSLVVLTSMAGYALAPAPFQLTTF 500
LSK +LT+LVV T+ AG+ALAP PF F
Sbjct: 160 LSKIKLTALVVSTTAAGFALAPGPFDWPCF 189
Score = 37.5 bits (83), Expect = 0.055
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2
Query: 503 ILAVGTGLVSAAANSINQYHEVPLMPQCRGQRTGCLSKVY*SPSMQ*GFA 652
+ +VGTGL S AANSINQ+ EVP + L + SP + FA
Sbjct: 191 LTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFA 240
>U09466-1|AAA21148.1| 443|Homo sapiens heme A:farnesyltransferase
protein.
Length = 443
Score = 41.5 bits (93), Expect = 0.003
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +3
Query: 246 PASARISTAQNWRSKVPLKTQTTATVK---NKVTQDTRVWKETPS--YDRKSNTGQYCLM 410
P S +S N + + L+ + K T++ + WKE YD Q
Sbjct: 104 PPSLSLSRKPNEKELIELEPDSVIEDSIDVGKETKEEKRWKEMKLQVYDLPGILAQ---- 159
Query: 411 LSKSRLTSLVVLTSMAGYALAPAPFQLTTF 500
LSK +LT+LVV T+ AG+ALAP PF F
Sbjct: 160 LSKIKLTALVVSTTAAGFALAPGPFDWPCF 189
Score = 37.5 bits (83), Expect = 0.055
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2
Query: 503 ILAVGTGLVSAAANSINQYHEVPLMPQCRGQRTGCLSKVY*SPSMQ*GFA 652
+ +VGTGL S AANSINQ+ EVP + L + SP + FA
Sbjct: 191 LTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFA 240
>BT006985-1|AAP35631.1| 443|Homo sapiens COX10 homolog, cytochrome
c oxidase assembly protein, heme A: farnesyltransfera
protein.
Length = 443
Score = 41.5 bits (93), Expect = 0.003
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +3
Query: 246 PASARISTAQNWRSKVPLKTQTTATVK---NKVTQDTRVWKETPS--YDRKSNTGQYCLM 410
P S +S N + + L+ + K T++ + WKE YD Q
Sbjct: 104 PPSLSLSRKPNEKELIELEPDSVIEDSIDVGKETKEEKRWKEMKLQVYDLPGILAQ---- 159
Query: 411 LSKSRLTSLVVLTSMAGYALAPAPFQLTTF 500
LSK +LT+LVV T+ AG+ALAP PF F
Sbjct: 160 LSKIKLTALVVSTTAAGFALAPGPFDWPCF 189
Score = 37.5 bits (83), Expect = 0.055
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2
Query: 503 ILAVGTGLVSAAANSINQYHEVPLMPQCRGQRTGCLSKVY*SPSMQ*GFA 652
+ +VGTGL S AANSINQ+ EVP + L + SP + FA
Sbjct: 191 LTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFA 240
>BC006394-1|AAH06394.1| 443|Homo sapiens COX10 homolog, cytochrome
c oxidase assembly protein, heme A: farnesyltransfera
protein.
Length = 443
Score = 41.5 bits (93), Expect = 0.003
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +3
Query: 246 PASARISTAQNWRSKVPLKTQTTATVK---NKVTQDTRVWKETPS--YDRKSNTGQYCLM 410
P S +S N + + L+ + K T++ + WKE YD Q
Sbjct: 104 PPSLSLSRKPNEKELIELEPDSVIEDSIDVGKETKEEKRWKEMKLQVYDLPGILAQ---- 159
Query: 411 LSKSRLTSLVVLTSMAGYALAPAPFQLTTF 500
LSK +LT+LVV T+ AG+ALAP PF F
Sbjct: 160 LSKIKLTALVVSTTAAGFALAPGPFDWPCF 189
Score = 37.5 bits (83), Expect = 0.055
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2
Query: 503 ILAVGTGLVSAAANSINQYHEVPLMPQCRGQRTGCLSKVY*SPSMQ*GFA 652
+ +VGTGL S AANSINQ+ EVP + L + SP + FA
Sbjct: 191 LTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFA 240
>BC000060-1|AAH00060.1| 443|Homo sapiens COX10 homolog, cytochrome
c oxidase assembly protein, heme A: farnesyltransfera
protein.
Length = 443
Score = 41.5 bits (93), Expect = 0.003
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +3
Query: 246 PASARISTAQNWRSKVPLKTQTTATVK---NKVTQDTRVWKETPS--YDRKSNTGQYCLM 410
P S +S N + + L+ + K T++ + WKE YD Q
Sbjct: 104 PPSLSLSRKPNEKELIELEPDSVIEDSIDVGKETKEEKRWKEMKLQVYDLPGILAQ---- 159
Query: 411 LSKSRLTSLVVLTSMAGYALAPAPFQLTTF 500
LSK +LT+LVV T+ AG+ALAP PF F
Sbjct: 160 LSKIKLTALVVSTTAAGFALAPGPFDWPCF 189
Score = 37.5 bits (83), Expect = 0.055
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2
Query: 503 ILAVGTGLVSAAANSINQYHEVPLMPQCRGQRTGCLSKVY*SPSMQ*GFA 652
+ +VGTGL S AANSINQ+ EVP + L + SP + FA
Sbjct: 191 LTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFA 240
>L25851-1|AAB59359.2| 1179|Homo sapiens integrin alpha E precursor
protein.
Length = 1179
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 169 TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
TL +HG+V V SKP + + H E+ H GE F
Sbjct: 958 TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 999
>BC117207-1|AAI17208.1| 1179|Homo sapiens integrin, alpha E (antigen
CD103, human mucosal lymphocyte antigen 1; alpha pol
protein.
Length = 1179
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 169 TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
TL +HG+V V SKP + + H E+ H GE F
Sbjct: 958 TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 999
>BC113436-1|AAI13437.1| 1179|Homo sapiens integrin, alpha E (antigen
CD103, human mucosal lymphocyte antigen 1; alpha pol
protein.
Length = 1179
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 169 TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
TL +HG+V V SKP + + H E+ H GE F
Sbjct: 958 TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 999
>AF168787-6|AAF43107.1| 1127|Homo sapiens HUMINAE protein.
Length = 1127
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 169 TLCLKHGYVGVYSKPVLFKITNNTLFQHLPEYQQHKTGEVKF 294
TL +HG+V V SKP + + H E+ H GE F
Sbjct: 906 TLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEFLFHVHGENLF 947
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,920,752
Number of Sequences: 237096
Number of extensions: 2432116
Number of successful extensions: 7624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7620
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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