Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0394.Seq
         (797 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p pro...    50   3e-06
AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA...    50   3e-06
BT003319-1|AAO25079.1|  470|Drosophila melanogaster AT27573p pro...    32   1.0  
AY089387-1|AAL90125.1|  426|Drosophila melanogaster AT21186p pro...    32   1.0  
AY089341-1|AAL90079.1|  434|Drosophila melanogaster AT16007p pro...    32   1.0  
AE014296-1873|AAN11891.1|  471|Drosophila melanogaster CG32081-P...    32   1.0  
AJ439431-1|CAD28424.1|   76|Drosophila melanogaster reverse tran...    29   7.4  

>AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p
           protein.
          Length = 391

 Score = 50.4 bits (115), Expect = 3e-06
 Identities = 27/50 (54%), Positives = 31/50 (62%)
 Frame = +3

Query: 354 WKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFA 503
           W  +P Y     T      LSK RLTSLVV+T+M GYA+APA F  TTFA
Sbjct: 61  WMPSP-YTMPGKTLSQYKKLSKFRLTSLVVITTMGGYAMAPAAFDPTTFA 109



 Score = 45.6 bits (103), Expect = 8e-05
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +2

Query: 485 STYYLCILAVGTGLVSAAANSINQYHEVPLMPQ 583
           +T+ +C L  GTGLVSAAAN+INQYHEVP   Q
Sbjct: 106 TTFAMCTL--GTGLVSAAANAINQYHEVPFDSQ 136



 Score = 40.7 bits (91), Expect = 0.002
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +1

Query: 574 DAPMSRTKNRVLVQGLLEPVHAIGFCSIGQAA 669
           D+ MSRTKNRVLV G + P+HA+ F ++   A
Sbjct: 134 DSQMSRTKNRVLVTGQMTPLHAVTFAAVSATA 165


>AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA
           protein.
          Length = 391

 Score = 50.4 bits (115), Expect = 3e-06
 Identities = 27/50 (54%), Positives = 31/50 (62%)
 Frame = +3

Query: 354 WKETPSYDRKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFA 503
           W  +P Y     T      LSK RLTSLVV+T+M GYA+APA F  TTFA
Sbjct: 61  WMPSP-YTMPGKTLSQYKKLSKFRLTSLVVITTMGGYAMAPAAFDPTTFA 109



 Score = 45.6 bits (103), Expect = 8e-05
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +2

Query: 485 STYYLCILAVGTGLVSAAANSINQYHEVPLMPQ 583
           +T+ +C L  GTGLVSAAAN+INQYHEVP   Q
Sbjct: 106 TTFAMCTL--GTGLVSAAANAINQYHEVPFDSQ 136



 Score = 40.7 bits (91), Expect = 0.002
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +1

Query: 574 DAPMSRTKNRVLVQGLLEPVHAIGFCSIGQAA 669
           D+ MSRTKNRVLV G + P+HA+ F ++   A
Sbjct: 134 DSQMSRTKNRVLVTGQMTPLHAVTFAAVSATA 165


>BT003319-1|AAO25079.1|  470|Drosophila melanogaster AT27573p
           protein.
          Length = 470

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 676 GLTLLVQCCKTLLHGRALINLGQAPCSLSSTLGHQWYFMILIY 548
           G+ LLV  C  L+HG  ++ +    CS    +G+  Y + ++Y
Sbjct: 52  GIILLVSVCFMLIHGMQMLIICMIECSRRMQIGYATYPVAMVY 94


>AY089387-1|AAL90125.1|  426|Drosophila melanogaster AT21186p
           protein.
          Length = 426

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 676 GLTLLVQCCKTLLHGRALINLGQAPCSLSSTLGHQWYFMILIY 548
           G+ LLV  C  L+HG  ++ +    CS    +G+  Y + ++Y
Sbjct: 52  GIILLVSVCFMLIHGMQMLIICMIECSRRMQIGYATYPVAMVY 94


>AY089341-1|AAL90079.1|  434|Drosophila melanogaster AT16007p
           protein.
          Length = 434

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 676 GLTLLVQCCKTLLHGRALINLGQAPCSLSSTLGHQWYFMILIY 548
           G+ LLV  C  L+HG  ++ +    CS    +G+  Y + ++Y
Sbjct: 15  GIILLVSVCFMLIHGMQMLIICMIECSRRMQIGYATYPVAMVY 57


>AE014296-1873|AAN11891.1|  471|Drosophila melanogaster CG32081-PA
           protein.
          Length = 471

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 676 GLTLLVQCCKTLLHGRALINLGQAPCSLSSTLGHQWYFMILIY 548
           G+ LLV  C  L+HG  ++ +    CS    +G+  Y + ++Y
Sbjct: 52  GIILLVSVCFMLIHGMQMLIICMIECSRRMQIGYATYPVAMVY 94


>AJ439431-1|CAD28424.1|   76|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 76

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 260 SGRCWKSVLLVILNKTGFE*TPTYPC 183
           SGR W  +L  +L K GF   P+ PC
Sbjct: 36  SGREWNKLLNEVLQKIGFSSCPSEPC 61


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,519,777
Number of Sequences: 53049
Number of extensions: 759948
Number of successful extensions: 1452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)