Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0394.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.81 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.6  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 509 AVGTGLVSAAANSINQYHEVPLMPQCRGQRTGCLSKV 619
           AV T ++     S N YHE  ++P+ RG+   C + V
Sbjct: 286 AVSTRILRDENLSQNSYHEFQILPE-RGELGHCTASV 321


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 598 SLSSTLGHQWYFMILIY 548
           S S+TL H  Y M+L+Y
Sbjct: 190 SASTTLSHAEYSMLLVY 206


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = -1

Query: 353 YSGVLGDFILYRCSCLSFKWNFTSPVLC 270
           Y G+      Y C      W  T+P +C
Sbjct: 476 YDGIRDMIGYYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = -1

Query: 353 YSGVLGDFILYRCSCLSFKWNFTSPVLC 270
           Y G+      Y C      W  T+P +C
Sbjct: 529 YDGIRDMIGYYPCCWWKICWTITTPAIC 556


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 678 KALRCLSNAAKPYCMDGL**TLDKHPVL 595
           KA R + +A  PY  + L  T  KHPV+
Sbjct: 44  KAHRVVLSACSPYFRELLKSTPCKHPVI 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,456
Number of Sequences: 438
Number of extensions: 5176
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)