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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0394.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23660.2 68417.m03407 UbiA prenyltransferase family protein s...    32   0.38 
At4g23660.1 68417.m03406 UbiA prenyltransferase family protein s...    32   0.38 
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    31   0.89 
At2g44520.1 68415.m05535 UbiA prenyltransferase family protein s...    31   1.2  
At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /...    29   4.7  
At2g20050.1 68415.m02343 protein phosphatase 2C, putative / PP2C...    29   4.7  
At4g30150.1 68417.m04287 expressed protein                             28   6.2  
At1g04200.1 68414.m00410 expressed protein Contains similarity t...    28   8.3  

>At4g23660.2 68417.m03407 UbiA prenyltransferase family protein
           similar to para-hydroxybenzoate--polyprenyltransferase,
           mitochondrial [Precursor] [Saccharomyces cerevisiae],
           SP|P32378; contains PF01040 UbiA prenyltransferase
           family domain
          Length = 407

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = +1

Query: 475 LPRFNLLPLHSGCGYWSSISCSKLYKSVS*STIDAPMSRTKNRVLVQGLLEPVHAIGFCS 654
           LP F  + L  GCG             +    ID  + RTK R +  GLL P   IGF  
Sbjct: 159 LPSFKYMALF-GCGALLLRGAGCTINDLLDQDIDTKVDRTKLRPIASGLLTPFQGIGFLG 217

Query: 655 I 657
           +
Sbjct: 218 L 218


>At4g23660.1 68417.m03406 UbiA prenyltransferase family protein
           similar to para-hydroxybenzoate--polyprenyltransferase,
           mitochondrial [Precursor] [Saccharomyces cerevisiae],
           SP|P32378; contains PF01040 UbiA prenyltransferase
           family domain
          Length = 407

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = +1

Query: 475 LPRFNLLPLHSGCGYWSSISCSKLYKSVS*STIDAPMSRTKNRVLVQGLLEPVHAIGFCS 654
           LP F  + L  GCG             +    ID  + RTK R +  GLL P   IGF  
Sbjct: 159 LPSFKYMALF-GCGALLLRGAGCTINDLLDQDIDTKVDRTKLRPIASGLLTPFQGIGFLG 217

Query: 655 I 657
           +
Sbjct: 218 L 218


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 698 PXITNRQRPYAACPMLQNPIAW--TGSNKPWTSTLFF 594
           P IT +  P    P++ NP+ W   GS+   T TLFF
Sbjct: 718 PAITPQTFPQTQAPIINNPLLWERLGSDAYGTDTLFF 754


>At2g44520.1 68415.m05535 UbiA prenyltransferase family protein
           similar to SP|Q12887 Protoheme IX farnesyltransferase,
           mitochondrial precursor (EC 2.5.1.-) (Heme O synthase)
           {Homo sapiens}, SP|P21592 COX10 {Saccharomyces
           cerevisiae}
          Length = 431

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 467 TSTCPVSTYYLCILAVGTGLVSAAANSINQYHEV 568
           T    +S   LC    GT +++A+ANS+NQ  E+
Sbjct: 122 TGNAAISFPGLCYTCAGTMMIAASANSLNQIFEI 155


>At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Brassica napus]
           GI:1212786; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 422 TVNIISCVDVY-GRIRTSTCPVSTYYLCILAVGTGLVSAAANSINQ-YHEVPLMPQC 586
           T++ + C ++Y  R+  +TCP S Y + I+   +  V    +SIN  Y  + L   C
Sbjct: 204 TIHSVYCRNLYIHRVTANTCPESPYTIGIVPDSSENVCIQESSINMGYDAISLKSGC 260


>At2g20050.1 68415.m02343 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain;
          Length = 514

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 597 EQGA-CPRFIRARPCNRVLQHWTSSVRPLAVCN 692
           E GA C +F++ R C  +L+H    V P   CN
Sbjct: 152 EFGAQCSQFVKRRLCENLLRHGRFRVDPAEACN 184


>At4g30150.1 68417.m04287 expressed protein
          Length = 2009

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -3

Query: 396 VPYCSSCHMMVFPSILWCLG*LYSLPLQLSEF*VELYFSS 277
           V +C+    +V+ S++ CLG L+S    +S   ++L+FS+
Sbjct: 227 VDFCNGQGFVVYSSVVDCLGLLFSSKSGMSNDNLDLWFST 266


>At1g04200.1 68414.m00410 expressed protein Contains similarity to
           gb|Z69902 from C. elegans
          Length = 732

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 450 TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPSILW 346
           +S Q+ M+ ++ +  +    + SS H M+ PS+ W
Sbjct: 417 SSNQIYMMLIVLLILSQDSSFNSSIHKMILPSVPW 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,510
Number of Sequences: 28952
Number of extensions: 348451
Number of successful extensions: 751
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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