BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesV0394.Seq (797 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g23660.2 68417.m03407 UbiA prenyltransferase family protein s... 32 0.38 At4g23660.1 68417.m03406 UbiA prenyltransferase family protein s... 32 0.38 At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 31 0.89 At2g44520.1 68415.m05535 UbiA prenyltransferase family protein s... 31 1.2 At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /... 29 4.7 At2g20050.1 68415.m02343 protein phosphatase 2C, putative / PP2C... 29 4.7 At4g30150.1 68417.m04287 expressed protein 28 6.2 At1g04200.1 68414.m00410 expressed protein Contains similarity t... 28 8.3 >At4g23660.2 68417.m03407 UbiA prenyltransferase family protein similar to para-hydroxybenzoate--polyprenyltransferase, mitochondrial [Precursor] [Saccharomyces cerevisiae], SP|P32378; contains PF01040 UbiA prenyltransferase family domain Length = 407 Score = 32.3 bits (70), Expect = 0.38 Identities = 20/61 (32%), Positives = 25/61 (40%) Frame = +1 Query: 475 LPRFNLLPLHSGCGYWSSISCSKLYKSVS*STIDAPMSRTKNRVLVQGLLEPVHAIGFCS 654 LP F + L GCG + ID + RTK R + GLL P IGF Sbjct: 159 LPSFKYMALF-GCGALLLRGAGCTINDLLDQDIDTKVDRTKLRPIASGLLTPFQGIGFLG 217 Query: 655 I 657 + Sbjct: 218 L 218 >At4g23660.1 68417.m03406 UbiA prenyltransferase family protein similar to para-hydroxybenzoate--polyprenyltransferase, mitochondrial [Precursor] [Saccharomyces cerevisiae], SP|P32378; contains PF01040 UbiA prenyltransferase family domain Length = 407 Score = 32.3 bits (70), Expect = 0.38 Identities = 20/61 (32%), Positives = 25/61 (40%) Frame = +1 Query: 475 LPRFNLLPLHSGCGYWSSISCSKLYKSVS*STIDAPMSRTKNRVLVQGLLEPVHAIGFCS 654 LP F + L GCG + ID + RTK R + GLL P IGF Sbjct: 159 LPSFKYMALF-GCGALLLRGAGCTINDLLDQDIDTKVDRTKLRPIASGLLTPFQGIGFLG 217 Query: 655 I 657 + Sbjct: 218 L 218 >At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 family protein contains Pfam domain PF04153: NOT2 / NOT3 / NOT5 family Length = 843 Score = 31.1 bits (67), Expect = 0.89 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 698 PXITNRQRPYAACPMLQNPIAW--TGSNKPWTSTLFF 594 P IT + P P++ NP+ W GS+ T TLFF Sbjct: 718 PAITPQTFPQTQAPIINNPLLWERLGSDAYGTDTLFF 754 >At2g44520.1 68415.m05535 UbiA prenyltransferase family protein similar to SP|Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.-) (Heme O synthase) {Homo sapiens}, SP|P21592 COX10 {Saccharomyces cerevisiae} Length = 431 Score = 30.7 bits (66), Expect = 1.2 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 467 TSTCPVSTYYLCILAVGTGLVSAAANSINQYHEV 568 T +S LC GT +++A+ANS+NQ E+ Sbjct: 122 TGNAAISFPGLCYTCAGTMMIAASANSLNQIFEI 155 >At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to polygalacturonase [Brassica napus] GI:1212786; contains PF00295: Glycosyl hydrolases family 28 Length = 449 Score = 28.7 bits (61), Expect = 4.7 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = +2 Query: 422 TVNIISCVDVY-GRIRTSTCPVSTYYLCILAVGTGLVSAAANSINQ-YHEVPLMPQC 586 T++ + C ++Y R+ +TCP S Y + I+ + V +SIN Y + L C Sbjct: 204 TIHSVYCRNLYIHRVTANTCPESPYTIGIVPDSSENVCIQESSINMGYDAISLKSGC 260 >At2g20050.1 68415.m02343 protein phosphatase 2C, putative / PP2C, putative contains PF00481: Protein phosphatase 2C domain; Length = 514 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +3 Query: 597 EQGA-CPRFIRARPCNRVLQHWTSSVRPLAVCN 692 E GA C +F++ R C +L+H V P CN Sbjct: 152 EFGAQCSQFVKRRLCENLLRHGRFRVDPAEACN 184 >At4g30150.1 68417.m04287 expressed protein Length = 2009 Score = 28.3 bits (60), Expect = 6.2 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = -3 Query: 396 VPYCSSCHMMVFPSILWCLG*LYSLPLQLSEF*VELYFSS 277 V +C+ +V+ S++ CLG L+S +S ++L+FS+ Sbjct: 227 VDFCNGQGFVVYSSVVDCLGLLFSSKSGMSNDNLDLWFST 266 >At1g04200.1 68414.m00410 expressed protein Contains similarity to gb|Z69902 from C. elegans Length = 732 Score = 27.9 bits (59), Expect = 8.3 Identities = 10/35 (28%), Positives = 20/35 (57%) Frame = -3 Query: 450 TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPSILW 346 +S Q+ M+ ++ + + + SS H M+ PS+ W Sbjct: 417 SSNQIYMMLIVLLILSQDSSFNSSIHKMILPSVPW 451 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,005,510 Number of Sequences: 28952 Number of extensions: 348451 Number of successful extensions: 751 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 730 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 751 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1804564000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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