Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0392.Seq
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...   127   2e-30
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...   112   7e-26
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    70   4e-13
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    58   1e-09
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    38   0.002
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    35   0.012
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    35   0.012
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    34   0.028
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    29   1.1  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    28   1.4  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   3.2  
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    27   4.3  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    27   4.3  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    26   5.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   7.5  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   7.5  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score =  127 bits (306), Expect = 2e-30
 Identities = 68/138 (49%), Positives = 85/138 (61%)
 Frame = +3

Query: 255 YKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDS 434
           YKL++GE+VTTIPTIGFNVE V Y+N+ F VWD+GGQ  IRP WR Y+ NT  II+VVDS
Sbjct: 35  YKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDS 94

Query: 435 ADRDRIGISKDELVHMLREEELANAYSLF*PTNRTWPDV*Q*PRYTRPWGLDALRDRTFP 614
            DR+RI  + +EL  ML E+EL +A  L     +  P+       T   GL +LR R   
Sbjct: 95  NDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHR--- 151

Query: 615 XL*DFSRQRRXARSGDGL 668
               +  Q   A SGDGL
Sbjct: 152 ---QWYIQATCATSGDGL 166



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 178 FRGLLGAREMRILILGLDGAGKTTILINCK 267
           F+ L G REMRIL++GLD AGKTTIL   K
Sbjct: 9   FQSLFGKREMRILMVGLDAAGKTTILYKLK 38


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score =  112 bits (269), Expect = 7e-26
 Identities = 59/138 (42%), Positives = 82/138 (59%)
 Frame = +3

Query: 255 YKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDS 434
           YKL++ + V TIPT+GFNVE VTYKN+KF VWD+GGQ  IRP WR Y+  T  +I+VVDS
Sbjct: 39  YKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDS 98

Query: 435 ADRDRIGISKDELVHMLREEELANAYSLF*PTNRTWPDV*Q*PRYTRPWGLDALRDRTFP 614
           AD +RI  ++ EL  ++ + E+ +   L     +  P      + T    LD L+DR   
Sbjct: 99  ADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRL-- 156

Query: 615 XL*DFSRQRRXARSGDGL 668
               ++ Q   A +GDGL
Sbjct: 157 ----WNVQPTCALTGDGL 170



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 20/35 (57%), Positives = 22/35 (62%)
 Frame = +1

Query: 163 GLFSYFRGLLGAREMRILILGLDGAGKTTILINCK 267
           G    F  L   +EMRIL+LGLD AGKTTIL   K
Sbjct: 8   GFSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLK 42


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 29/70 (41%), Positives = 48/70 (68%)
 Frame = +3

Query: 291 PTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDE 470
           PT GF +  +  + L+F +WD+GGQ ++R +W+ Y+ +T+AII+VVDS D  R+   ++ 
Sbjct: 46  PTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNT 105

Query: 471 LVHMLREEEL 500
           L  +L EE+L
Sbjct: 106 LQELLVEEKL 115



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +1

Query: 190 LGAREMRILILGLDGAGKTTIL 255
           L  RE+R+L+LGLD AGKTTIL
Sbjct: 12  LKEREVRVLLLGLDNAGKTTIL 33


>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 28/71 (39%), Positives = 41/71 (57%)
 Frame = +3

Query: 291 PTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDE 470
           PT+    E++   N++F  +DLGG    R  WR Y+   + I+Y+VD  D +R+  SK E
Sbjct: 50  PTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAE 109

Query: 471 LVHMLREEELA 503
           L  +L  EELA
Sbjct: 110 LDALLAMEELA 120



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 199 REMRILILGLDGAGKTTILINCKSVR 276
           +  ++L LGLD AGKTT+L   K+ R
Sbjct: 19  KHAKMLFLGLDNAGKTTLLHMLKNDR 44


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 288 IPTIGFNVEQVTY----KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRD 446
           I TIG + +  T+    K +K Q+WD  GQ   R     YY     II V D  D+D
Sbjct: 38  ISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQD 94


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +3

Query: 294 TIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDR 449
           T+G +    T  +L+ +++D+GGQ + R  W   + N ++II+ V   D D+
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDK 230


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 246 DNSYKLQVG-EVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIY 422
           D+     VG +  + I ++G   +Q   K +K Q+WD  GQ   R   R YY      + 
Sbjct: 35  DDQVSHTVGIDFASRIISVGMGNQQ---KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVL 91

Query: 423 VVDSADRD 446
           V D  ++D
Sbjct: 92  VYDVTNKD 99


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 33.9 bits (74), Expect = 0.028
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 279 VTTIPTIGFNVEQVTY--KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADR 443
           +TTI  I F +  +    K +K Q+WD  GQ   R     YY     I+ + D  D+
Sbjct: 39  ITTIG-IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDK 94


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +3

Query: 330 NLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLRE 491
           ++K ++WD  GQ   +     YY N +  I V D      +  +K  +  + R+
Sbjct: 63  SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQ 116


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 523 SQQTGHGRMSDSSRGTPGPGAWTPCAIEPFQ 615
           S   G+ +  DSS G PG  A +P  IE FQ
Sbjct: 105 SASNGYEKKLDSSIGNPGEKAVSPVHIEDFQ 135


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 327 KNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVD 431
           K +K Q+WD  GQ   R     YY      + V D
Sbjct: 57  KKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYD 91


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 464 FRYSYSIPVS*VYNIYYCICVAIVTSPIRPN 372
           F ++Y++  S VYN  + +C  + T+P + N
Sbjct: 494 FDFTYNLSESEVYNTVFNLCDELYTTPCKKN 524


>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 297 IGFNVEQVTYKN--LKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKD 467
           + F  + ++ +N  + F +WDLGGQ            +  AI+++ D + +  +   K+
Sbjct: 45  VNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 649 LDQAMDWLSNALQARELTFTVGVLYEEXPRPASPXNEPCVRG 774
           ++ ++   S  L   +    V  L +  P PASP +EP V G
Sbjct: 287 IEASLGSFSKVLDTYQFAEVVSCLEKTLPPPASPNSEPQVTG 328


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 193 GAREMRILILGLDGAGKTTIL 255
           G  ++++L+LG   +GKTTI+
Sbjct: 71  GGNDIKVLLLGAGDSGKTTIM 91


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 296  RRYSGHDLTDLQFIRIVVFPAPSNPSIKIRISLA 195
            R  S H+L+ + FIR +  P P++   KI   LA
Sbjct: 1107 RNNSSHELSLVAFIREMAMPVPNDEFKKISTILA 1140


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 641 PLTAEVLKXWKGSIAQGVQAPGPGVPRLLSDIRPCPVCWLKQRVCVR*FF 492
           P+  E  + +   IA     P    PR +S  + CP+C       VR FF
Sbjct: 427 PMIVETQEEYDHYIAPYWNFPSEPFPRTMSFSKMCPLCCTTLSKFVRHFF 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,210
Number of Sequences: 5004
Number of extensions: 70779
Number of successful extensions: 187
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)