Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0391.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    34   0.15 
03_05_0977 + 29355824-29357056                                         31   1.4  
07_03_0854 + 22029025-22030269                                         30   1.9  
05_01_0078 - 523366-525196,525622-525675,527135-529341                 28   7.5  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    28   9.9  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 321 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 461
           D +G G+YG         N  +V +  +SLE I  E+LN+ +  F W
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>03_05_0977 + 29355824-29357056
          Length = 410

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 213 DLLEEHVRLFEVLRRTGRSNG*PNG-LLSGTTDLNGSDSLGVGSYG*TNTN 362
           D+L   ++LF  L      N  PNG L S +TD   + S+  G  G T TN
Sbjct: 330 DVLNNQIKLFIDLTSAAELNYRPNGTLASASTDAENATSVDRGHDGNTGTN 380


>07_03_0854 + 22029025-22030269
          Length = 414

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -2

Query: 580 LXWFVXKVNPGXFQITRSSX-GFAFXRKTXYRCPNFKGFWXQGKIPTDMFNSSDTMPSRL 404
           L W V  V  G F + R    G A  R      P F+ +    +IP D+  S    P R 
Sbjct: 111 LSWVVRDVLDGRFLLDRDGGEGGAALRILAVCDPLFRRYSLLPQIPEDLAASVRRRPRRG 170

Query: 403 MLPKGTYDGF 374
           + P G +D F
Sbjct: 171 VAPNGRFDTF 180


>05_01_0078 - 523366-525196,525622-525675,527135-529341
          Length = 1363

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 302 CSGQQTIRLXIRSPRSPQYFKQP 234
           CS QQ + L   SP  PQ F QP
Sbjct: 25  CSSQQQLSLYNYSPSDPQLFSQP 47


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 297 GTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLG-SISLEGIVSEELNMSV 446
           G TD+ G D  G+  +G  +   +K   S  PLG  ++    V+  LN+SV
Sbjct: 55  GDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSV 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,665
Number of Sequences: 37544
Number of extensions: 288070
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)