Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0391.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    31   1.2  
At3g58600.1 68416.m06531 expressed protein hypothetical protein ...    29   2.7  
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   3.6  
At3g02030.1 68416.m00166 hydrolase, alpha/beta fold family prote...    28   6.2  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   8.3  

>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 321 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 437
           D +G G+YG         N  +V +  +SLE IV E+LN
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62


>At3g58600.1 68416.m06531 expressed protein hypothetical protein
           F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
          Length = 302

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 353 EYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLXPKAFKIRASVXSL 502
           +Y   EGE+IV  L+    +    + VE    NLSL  K   I  ++ S+
Sbjct: 178 DYSLKEGETIVLQLKNRSDKDSKSKTVEKSLGNLSLEDKGKSIETTIPSI 227


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 300  TTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSV 446
            T+DL G+ S  +G Y      SW G P+ V L     E ++SE+ N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136


>At3g02030.1 68416.m00166 hydrolase, alpha/beta fold family protein
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family; contains non-consensus splice site (GC) at
           intron 10
          Length = 565

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
 Frame = -2

Query: 505 RKTXYRCPNFKGFWXQGKIPTDMFNSSDTMPSRLMLP----KGTYDGFPFQLFV 356
           R   Y  P  K FW   +   D     D  PSR   P    K   DG P  LF+
Sbjct: 44  RLVDYEQPFVKSFWNYLEAAKDFIRPEDNGPSRWFSPLERSKDPCDGAPLLLFL 97


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 321 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 437
           D +G G+YG         N  +V +  +SLE I  E+LN
Sbjct: 24  DEIGKGAYGRVYIGLDLENGDFVAIKQVSLENIGQEDLN 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,130,152
Number of Sequences: 28952
Number of extensions: 244147
Number of successful extensions: 511
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)