Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0388.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.8  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    25   8.4  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   8.4  

>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 561 LKPPGYPWRTRP 526
           LKPP  PW TRP
Sbjct: 434 LKPPSSPWPTRP 445


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 151 TFSAPFRLLPIRAMRLFSCARCRAIALR 68
           ++    RLL +RA +L S +RC A+ L+
Sbjct: 456 SYPMTIRLLGVRATKLVSKSRCLAMQLK 483


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -2

Query: 399 SAVHF---PTFNFFTFQHGVSLSRARDDVSHV 313
           S VHF   P  NFF   H + LS +   +SH+
Sbjct: 145 SHVHFHLIPFINFFLLYHQIILSHSLFHISHL 176


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 586 VASGAVGGSKAPGVPMEDQTLRRWYSVPALT 494
           V  GA GG  A  +PM+D  L     + A+T
Sbjct: 441 VKGGAAGGGYAQFIPMDDFNLHMTGDIHAVT 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,137
Number of Sequences: 5004
Number of extensions: 26784
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)