Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0386.Seq
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 84 2e-17
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 59 4e-10
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 1.6
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 2.7
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 4.8
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 6.3
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 6.3
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 25 6.3
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ... 25 8.3
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 83.8 bits (198), Expect = 2e-17
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 174
+++ + P VLF I+D R++ ++ RVIGTLLGT D +E+ +CF VPH E ++QVE
Sbjct: 21 LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80
Query: 175 AELNYAMDVYELNRRVNSSESIVGWWA 255
E+ Y +Y L+ + N E +VGW+A
Sbjct: 81 VEMEYHRAMYHLHLKANPREVVVGWYA 107
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 59.3 bits (137), Expect = 4e-10
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 177
V VHP+VL VD+Y R RV+G LLG ++ VV V N + +P +E
Sbjct: 17 VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76
Query: 178 -ELNYAMDVYELNRRVNSSESIVGWW 252
+ N+ + E+ +++N++E +VGW+
Sbjct: 77 LDHNFMESMNEMFKKINANEKLVGWY 102
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 461 FIPCESD-IYRSEHATLLSIGHSH 393
F PC D IYR +HA ++ +G +H
Sbjct: 490 FTPCMVDLIYRQKHARIVIVGDAH 513
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 49 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 174
Y+ R DSHR I L GT + + + + +K H ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 60 KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 203
+ R S SY I ++ SGG + + L A RTC S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.4 bits (53), Expect = 6.3
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2
Query: 422 HVHSCRCHSHM 454
H+H CRCH+++
Sbjct: 69 HIHCCRCHTYI 79
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 370 KPIRPPASEVSRVTLTGSRHSR 305
KP PP S++SR LT S R
Sbjct: 566 KPFHPPISKISRTRLTVSSPER 587
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 6.3
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -2
Query: 409 PLGTPIGTQTYARKPIRPPASEVSRVTLTGSRHSRE*YSCITEEWLVTSLPVPTNQQYF 233
P G+ +Q A I S +TL G S YS TEE L+T L T+ F
Sbjct: 903 PTGSYEVSQPLANVTILGLTESPSSITLNGQNVSSFQYSNDTEELLITGLQNITSSGAF 961
>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = -3
Query: 564 TSTCGKVGAPRPSPLDPRPHQTQSSGTLVDLQCQVH 457
T CG+ LD P QT S C+VH
Sbjct: 106 TMPCGEYSVELQKILDVHPPQTSSRKAATTWACKVH 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,759
Number of Sequences: 5004
Number of extensions: 57662
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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