Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0386.Seq
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 77 1e-14
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 59 3e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 48 6e-06
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232... 30 1.6
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 29 3.7
11_01_0433 - 3323372-3324616,3324708-3324905 28 4.9
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 28 4.9
07_03_0737 + 21087442-21088282,21088402-21088524,21088623-210887... 28 6.5
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 6.5
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 6.5
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 76.6 bits (180), Expect = 1e-14
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 180
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 181 LNYAMDVYELNRRVNSSESIVGWWA 255
+ Y ++Y + +VN E IVGW++
Sbjct: 78 IEYHHNMYASHHKVNPKEVIVGWFS 102
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/82 (28%), Positives = 44/82 (53%)
Frame = +3
Query: 255 TGNEVTNHSSVIHEYYSRECREPVNVTLDTSLAGGRMGLRAYVCVPMGVPNGKQRCMFTP 434
TG V+ S++IH++YSRE + P+++T+DT G ++AY+ + + + F
Sbjct: 103 TGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQFQE 162
Query: 435 VDVTLTWYEPDIVGLQVCQKTV 500
+ + L E VG + + T+
Sbjct: 163 IPLDLRMLEAGKVGFDILKSTI 184
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 175 AELNYAMDVYELNRRVNS 228
+ NY ++ + +R+N+
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 252
V G LLG V+EVTNCF P +E ++ +A+ NY +++ R VN + VGW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115
>01_06_1086 -
34421837-34422311,34422426-34422612,34423162-34423291,
34423485-34423720,34423804-34423961,34424048-34424128,
34424216-34424281,34424364-34424432,34424722-34424866,
34425645-34426138,34426244-34426811,34429529-34429574
Length = 884
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 223 NSSESIVGWWALAMK*PTTPLLYTSIIPVNAVSLSMLLWTL 345
N SES A K T LL I+PV A++L + LW L
Sbjct: 499 NISESYCAMQADKAKKNTATLLIAVIVPVVAITLMLFLWML 539
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 402 PNGKQRCMFTPVDVTLTWYEPDIVGLQ 482
P+ + R F P+DVT TW E DIV LQ
Sbjct: 276 PDHEDRFDFDPLDVTKTWPE-DIVPLQ 301
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 127
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 402 PNGKQRCMFTPVDVTLTWYEPDIVGLQ 482
P+ + R F P+DVT TW E DI+ LQ
Sbjct: 276 PDHEDRFDFDPLDVTKTWPE-DIIPLQ 301
>07_03_0737 +
21087442-21088282,21088402-21088524,21088623-21088744,
21088784-21089027,21089430-21089670,21089746-21089899,
21090179-21090214,21090215-21090520
Length = 688
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +3
Query: 141 RATQRTCRSSRSGT*LRDGCLRAEQKSQFL*KYCWLVGTGNEV-----TNHSSVIHEYYS 305
R +R C SS+ T +DGC+ +FL + + +E+ +N ++V +++
Sbjct: 97 RVARRDCPSSKDATTYQDGCIVRFSDQRFL-DFVGVNSPVSELYSDADSNITAVPVAWFN 155
Query: 306 RECREPVNVTLDTSLAGG 359
+N T+DT++A G
Sbjct: 156 AAVVALMNATVDTAVAAG 173
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 127
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 98 ARATKEWWK*PTASACHTKN-MPIKSK 175
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,228,893
Number of Sequences: 37544
Number of extensions: 415486
Number of successful extensions: 1116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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