Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0385.Seq
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.8  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.3  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 459 VIVSLYLSTAGCKPLPYPPQ*TILYLSHPIFSSILPQVISPLI*TKLLN 605
           V+V L L   G    P P   T++     +   +L   I PLI + L++
Sbjct: 73  VLVGLILGFLGRLANPTPQSITLISFPGELLMRLLKMFILPLIVSSLIS 121


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 612 KILFEIGNELSTSI*MIGNSNHKKYYMLFNLV 707
           KI+  + N  + S     N+N+KK Y   N +
Sbjct: 302 KIISSLSNSCNYSNNYYNNNNYKKLYYNINYI 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,667
Number of Sequences: 438
Number of extensions: 5845
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)