Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0382.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39990.1 68415.m04914 eukaryotic translation initiation facto...    79   3e-15
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    71   4e-13
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    71   8e-13
At1g10840.1 68414.m01246 eukaryotic translation initiation facto...    48   4e-06
At5g01240.2 68418.m00032 amino acid permease, putative strong si...    30   1.0  
At5g01240.1 68418.m00031 amino acid permease, putative strong si...    30   1.0  
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ...    28   4.1  
At2g28110.1 68415.m03415 exostosin family protein contains 1 tra...    27   9.5  

>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
           subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
           SP|O04202 Eukaryotic translation initiation factor 3
           subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 293

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 33/86 (38%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA 177
           ++ ++HP+V+F + D + RR   + RVIGTLLG+    G V++ N + VPH E +DQV  
Sbjct: 26  LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85

Query: 178 ELNYAMDVYELNRRVNSSXSIVGWWA 255
           +++Y  ++   + +VNS  +IVGW++
Sbjct: 86  DIDYHHNMLASHLKVNSKETIVGWYS 111



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 26/81 (32%), Positives = 42/81 (51%)
 Frame = +3

Query: 255 TGNEVTNHSSVIHEYYSRXCREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTP 434
           TG  V   SS+IH++Y+R    P+H+T+DT    G   ++A+V   L + + +    F  
Sbjct: 112 TGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQE 171

Query: 435 VDVTLTCYEPEIVGLQVCQKT 497
           + V L   + E VG  V + T
Sbjct: 172 IPVDLRMVDAERVGFDVLKAT 192


>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
           V VHP+VL  IVD Y R   DS  RV+G LLG+S +GVV+VTN + VP +E         
Sbjct: 17  VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76

Query: 175 AELNYAMDVYELNRRVNSSXSIVGWWALAMK 267
            + NY   ++ + +R+N+   +VGW++   K
Sbjct: 77  LDHNYHESMFHMFKRINAKEHVVGWYSTGPK 107


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
           V VHP+VL  IVD Y R   D S RV+G LLG+S +G V+VTN + VP +E         
Sbjct: 17  VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76

Query: 175 AELNYAMDVYELNRRVNSSXSIVGWWALAMK 267
            + NY   ++ + +R+N+   IVGW++   K
Sbjct: 77  LDHNYHESMFHMFKRINAKEHIVGWYSTGPK 107


>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 337

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +1

Query: 79  VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSXSIVGWW 252
           V G LLG     V+EVTNCF  P ++  +++EA+  NY +++    R VN   + VGW+
Sbjct: 47  VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105


>At5g01240.2 68418.m00032 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 408

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
           D++V L+ IH+ I F F    ++FVW  +A+G  H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271


>At5g01240.1 68418.m00031 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 488

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
           D++V L+ IH+ I F F    ++FVW  +A+G  H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351


>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 469

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 344 FAGWRSNGFTCI-CLCTIGSAKWKARL 421
           FAG+RS     + CLC +G A W  RL
Sbjct: 332 FAGYRSEIVRSVFCLCPLGWAPWSPRL 358


>At2g28110.1 68415.m03415 exostosin family protein contains 1
           transmembrane domain; similar to
           pectin-glucuronyltransferase (GI:23821292) [Nicotiana
           plumbaginifolia]; similar to NpGUT1 homolog
           (GI:23821294) [Arabidopsis thaliana]; contains Pfam
           profile PF03016: Exostosin family
          Length = 448

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 344 FAGWRSN-GFTCICLCTIGSAKWKARL 421
           FAG++S    +  CLC +G A W  RL
Sbjct: 318 FAGYQSEIARSVFCLCPLGWAPWSPRL 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,659,053
Number of Sequences: 28952
Number of extensions: 297106
Number of successful extensions: 770
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)