Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0381.Seq
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    28   1.3  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    27   3.9  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    27   3.9  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   5.2  

>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 495 KPLPYPPQ*TILYLSHPIFPGILATSH 575
           +PLP PP+ + LY   P+  G  A+SH
Sbjct: 89  QPLPLPPRNSSLYARFPLSAGAGASSH 115


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 57  DVDGRLLLYSSCRSAGGSTI**EKSASFYRRLRH*SGKR 173
           D+D R  LYS+   +GGST+       F   LR  SGK+
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKK 329


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 264 DYSAKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDE 151
           D  +   SRYN C   +   +P     +G  F  F DE
Sbjct: 201 DVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 286 YYILTEERLFSKIDVQIQPV*SSTTMPQSNNFVHSGYI 173
           YY ++  + FS+I VQ+QP  +    P +  F  + ++
Sbjct: 102 YYPISSIKKFSRIPVQLQPPLNKQNFPHNIEFETADFL 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,300
Number of Sequences: 5004
Number of extensions: 66871
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)