Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0378.Seq
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283...   133   1e-31
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986...   129   3e-30
08_02_0657 - 19749835-19751942,19753123-19753561                       99   2e-21
06_01_0057 - 483710-484309                                             29   4.0  

>03_01_0364 -
           2834446-2834742,2834838-2835197,2835281-2835562,
           2835634-2835705,2835798-2836019,2836105-2836871,
           2837206-2837434,2838027-2838189,2838313-2838350
          Length = 809

 Score =  133 bits (322), Expect = 1e-31
 Identities = 67/139 (48%), Positives = 85/139 (61%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CIVL+DD C + KIRM             DVVS+  CP VKYGKRVHIL
Sbjct: 65  LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHSPFCIVG 582
           PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F   G       K  +   + +CIV 
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIVA 184

Query: 583 S*LP*YTVNGEPIKREAEE 639
                +  +GEPIKRE EE
Sbjct: 185 PDTEIF-CDGEPIKREDEE 202



 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 41/65 (63%), Positives = 51/65 (78%)
 Frame = +2

Query: 62  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
           +D K   D STAIL RK  PNRL+V+EA +DDNSV+ +    ME+LQLFRGDTVLLKGK+
Sbjct: 11  SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70

Query: 242 RKETV 256
           RK+T+
Sbjct: 71  RKDTI 75


>10_08_0170 +
           15397381-15397418,15397519-15397681,15398419-15398647,
           15398777-15399543,15399650-15399871,15399961-15400032,
           15400100-15400408,15400491-15400850,15401199-15401492
          Length = 817

 Score =  129 bits (311), Expect = 3e-30
 Identities = 65/139 (46%), Positives = 84/139 (60%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           L +G+  +   CIVL+D+ C + KIRM             DVVS+  C  VKYGKRVHIL
Sbjct: 65  LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHSPFCIVG 582
           PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F   G       K  +   + +CIV 
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVA 184

Query: 583 S*LP*YTVNGEPIKREAEE 639
                +  +GEPIKRE EE
Sbjct: 185 PDTEIF-CDGEPIKREDEE 202



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 45/65 (69%), Positives = 52/65 (80%)
 Frame = +2

Query: 62  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
           AD K   D STAIL RK  PNRL+V+EA +DDNSVVAL    ME+LQLFRGDTVLLKGK+
Sbjct: 11  ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70

Query: 242 RKETV 256
           RK+T+
Sbjct: 71  RKDTI 75


>08_02_0657 - 19749835-19751942,19753123-19753561
          Length = 848

 Score =   99 bits (238), Expect = 2e-21
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 256 CIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTG 435
           C    D++CPD ++R+             D+V++ PCP+++  KRV + P DDSVEG++G
Sbjct: 79  CYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISG 138

Query: 436 NLFEVYLKPYFMEAYRPIHRDDTFRSAGAC-APSSSKWSKQIHSPFCIVGS*LP*YTVNG 612
           +LFE YLKPYFM+A RP+ + D F   G   A        + ++   IV      +   G
Sbjct: 139 DLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEG 198

Query: 613 EPIKREAEE 639
           +P+KRE EE
Sbjct: 199 DPVKREDEE 207



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 5/63 (7%)
 Frame = +2

Query: 83  DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 247
           D STAIL   +K  PNRL+ ++A   V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16  DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75

Query: 248 ETV 256
           E V
Sbjct: 76  EAV 78


>06_01_0057 - 483710-484309
          Length = 199

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 87  YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 233
           Y P    ART P  ++   + A    S W F    WS+  S V+T+  SR
Sbjct: 62  YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,260,317
Number of Sequences: 37544
Number of extensions: 480977
Number of successful extensions: 1159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)