Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0377.Seq
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)                 28   9.5  
SB_15883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 415 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 272
           PS ++ P+  Y G+PFQ     YP  P P     F  + P + P  YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210


>SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)
          Length = 899

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 643 LNTMRTAFPSALED---NWMNFYELDWFVPK 560
           LNT+RTA  S+L D    W N  E +W V K
Sbjct: 853 LNTLRTAIRSSLMDVGKGWFNMDERNWEVYK 883


>SB_15883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 643 LNTMRTAFPSALED---NWMNFYELDWFVPK 560
           LNT+RTA  S+L D    W N  E +W V K
Sbjct: 392 LNTLRTAIRSSLMDVGKGWFNMDERNWEVYK 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,432,853
Number of Sequences: 59808
Number of extensions: 404449
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)