Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0376.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    31   0.16 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   3.4  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    26   4.5  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    26   6.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.9  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   7.9  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
 Frame = +1

Query: 196 RIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPVPHQPG-KVRQMFEERRTKAGID 372
           R ++S+A+RS +    GP  +SP  G +  S    +PV   PG   +     R +   + 
Sbjct: 175 RAKSSMAVRSPSRLGNGPNVRSPKVGFNAKSDD--SPVVKSPGSNDKPSASPRISVRSLG 232

Query: 373 KSYPLQPIHNTERT---NRKTLPNGYAKVS-NSTTSTRVIVEKRSQKTHKQSALIALR 534
            S  ++P   T  T   +R  + N    +S NST+ ++V V   ++     SA   +R
Sbjct: 233 NSSVVRPPTRTSTTRPLSRVNVTNASGSISKNSTSPSKVKVNASTKIVRPVSAAQTVR 290


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
 Frame = +1

Query: 199 IENSIALRSTTGACLGPGEQSPSNGV-------STASSQQPTP 306
           I N ++ ++  GAC  P +    NG        ST SS  PTP
Sbjct: 812 IVNGVSYQNCNGACYNPSQYGCDNGALGPVQSSSTTSSITPTP 854


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 254 SNLPAMALVQPHRSSRRLYLISQERFVKCSKR 349
           S LPA   VQ H  S   +L+ +E F K S R
Sbjct: 7   STLPAWQAVQTHYESVGKHLVLKELFAKDSSR 38


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 102 TRKNDETNKKNKIQTSLQNCIIN 34
           TR   +T +KNKI+ SLQ+  +N
Sbjct: 287 TRSEPQTPRKNKIRDSLQSSPLN 309


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 154 SNAGQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPVP 312
           SN G +   +  R R + S + R +    L     SPS+   +ASS   T  P
Sbjct: 501 SNVGPVRISSNRRSR-KFSSSSRVSVSNLLAGSPPSPSSSTKSASSSYSTTTP 552


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 367 IDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTT 465
           IDKS P   + +  +TN  ++  G    SN+TT
Sbjct: 235 IDKSLPSSEMDSNLQTNPSSISKGKKNNSNNTT 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,780
Number of Sequences: 5004
Number of extensions: 48008
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)