Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0376.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 32 0.50
04_01_0441 - 5750765-5750822,5750936-5751026,5751112-5751313,575... 32 0.50
04_01_0442 + 5770019-5771626,5773500-5773571,5774508-5774603,577... 31 0.67
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 31 0.88
09_02_0252 - 6315834-6315959,6316074-6317018 30 2.0
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 30 2.0
10_08_0159 + 15306823-15306910,15307046-15307362 29 3.5
08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813... 28 6.2
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 28 8.2
07_03_1629 - 28246440-28247339 28 8.2
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169... 28 8.2
01_05_0086 - 18009957-18010107,18010428-18010557,18010700-180108... 28 8.2
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 31.9 bits (69), Expect = 0.50
Identities = 26/101 (25%), Positives = 45/101 (44%)
Frame = +1
Query: 139 RLQTASNAGQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPVPHQ 318
+++ S++ I+T TTT ++N L S L G SP+ + + +Q+ P Q
Sbjct: 402 QVELLSSSRAITTTTTTSLLLQNGGQLSSEDVRRLAAGLLSPNPSAAVSPTQRKPTKPRQ 461
Query: 319 PGKVRQMFEERRTKAGIDKSYPLQPIHNTERTNRKTLPNGY 441
GK++ + R + I K +H N + P GY
Sbjct: 462 RGKLKLQSQFIRDQNKICKK-GKAALHRYSLQNNE--PGGY 499
>04_01_0441 -
5750765-5750822,5750936-5751026,5751112-5751313,
5751392-5752033,5752175-5752409,5752500-5752619,
5752864-5753282
Length = 588
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/88 (22%), Positives = 38/88 (43%)
Frame = +1
Query: 274 VSTASSQQPTPVPHQPGKVRQMFEERRTKAGIDKSYPLQPIHNTERTNRKTLPNGYAKVS 453
+S+A+ +QP + H P ++MF +R A + P+ E + T P +
Sbjct: 295 LSSATDRQPVAMSHMPNSFKRMFSQRSAAAAAATTSTTSPLSKVEPS--ITSPLSRKSLL 352
Query: 454 NSTTSTRVIVEKRSQKTHKQSALIALRN 537
S S V + + S+ K +A ++
Sbjct: 353 GSPVSGSVSLVRESEGQEKSVEGVAFQS 380
>04_01_0442 +
5770019-5771626,5773500-5773571,5774508-5774603,
5774739-5774885,5775429-5775560
Length = 684
Score = 31.5 bits (68), Expect = 0.67
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Frame = +1
Query: 190 RKRIENSIALRSTTGACLGPG------EQSPSNGVSTASSQQPTPVPH--QPGKVRQMFE 345
RK I+ S+A S G+ E SPS+ ST+ P P H V Q+ +
Sbjct: 192 RKNIDGSLAESSANGSSRNNQRNNIILEPSPSSHESTSGLTAPAPTNHVFSYSPVEQLNQ 251
Query: 346 ERRTKAG--IDKSYPLQPIHNTER----TNRKTLPNGYAKVSNSTTSTRVIVEKRSQKTH 507
A + Y L H ER T +T PN Y + S++ + Q T
Sbjct: 252 NTNMSANAMLSDHYSLYGDHERERFLRNTRMRTSPNEYDQSSSNLLPEGSLRCSVYQPTQ 311
Query: 508 KQSALIALR 534
+QS I ++
Sbjct: 312 QQSLFIPVQ 320
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 SIALRSTTGACLGPGEQSPSNGVSTASSQQPTP-VPHQPGKVRQMFEERRTKAGIDKSYP 384
S A T + PG Q N + S+ P P P GK R+ +E G+ P
Sbjct: 720 SPAYNGKTSRSVSPGNQVEGNNKAAEVSKNPDPSSPPHHGKTRE--DEEEGALGLHACQP 777
Query: 385 LQPIH 399
PIH
Sbjct: 778 ALPIH 782
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 178 ETTTR-KRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPVPHQP 321
ETT R +R ++ R + GP SP +ST+SS+ P+P H+P
Sbjct: 20 ETTRRPRRRTREVSSRYLSSTTPGPVPSSPR--LSTSSSRTPSPRAHRP 66
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/62 (22%), Positives = 33/62 (53%)
Frame = +1
Query: 328 VRQMFEERRTKAGIDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTTSTRVIVEKRSQKTH 507
+ Q+F+E ++ GIDK Y + +++ ER Y + ++S + + + ++ Q +
Sbjct: 108 LHQLFKEVTSRGGIDKKYYMSLLYHFERLYLFEAQGWYQETADSRSISCIEMKAEGQASR 167
Query: 508 KQ 513
K+
Sbjct: 168 KR 169
>10_08_0159 + 15306823-15306910,15307046-15307362
Length = 134
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +1
Query: 160 AGQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPVPHQPG 324
A + + + +I+ +A+ S T + P +Q+P + P PHQ G
Sbjct: 50 ADAAAIQARLKAKIKRDVAIVSITAGAVEPPQQAPPAAAPPQQAAPPAAPPHQYG 104
>08_02_0069 -
11880841-11880936,11881150-11881221,11881263-11881343,
11881471-11881542,11882549-11882770,11882849-11882941,
11883509-11883601,11884546-11884632,11884958-11884990,
11885091-11885185,11886590-11886674,11886778-11886864,
11887757-11887846,11887929-11888057,11888668-11888757,
11888849-11888908,11889074-11889311,11889852-11890054
Length = 641
Score = 28.3 bits (60), Expect = 6.2
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Frame = +1
Query: 229 TGACLGPGEQSPSNGVSTASSQQPTPVPHQPGKVRQMFEER-RTKAGIDKSYPLQPIHNT 405
+ A G G+++ ++AS+ P P + + ++R R I L+ ++
Sbjct: 5 SAAAAGKGKEAKGKATTSASASAPNVEP-DVAYLEAVTQKRIRQFEEIQAKQALERLNIG 63
Query: 406 ERTNRKTLPNGYAKVSNSTTSTRVIVEKRSQKTHKQSALIALRNSKK*TIW 558
R TLP+G K ST + + K S LIA N T+W
Sbjct: 64 GEPIRITLPDGAVKDGKKWISTPMDIAKEISSGLANSCLIAQVNG---TLW 111
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 232 GACLGPGEQSPSNGVSTASSQQPTPVPHQPG 324
GA PG Q P G A S QP P PG
Sbjct: 240 GAPQWPGTQPPPFGAQAAPSSQPPPFMGVPG 270
>07_03_1629 - 28246440-28247339
Length = 299
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 224 AQQARALDRVSNLPAMALVQPHRSSRRLYLISQER 328
A A ++ S +P M V PHRSS L+ +R
Sbjct: 155 ASGASSVGECSTMPVMVPVDPHRSSMSSSLLDMDR 189
>06_03_0741 -
24016204-24016298,24016408-24016525,24016805-24016903,
24016992-24017117,24017200-24017277,24017366-24017554,
24018186-24018338,24018785-24018898,24019576-24019761,
24019845-24019970,24020053-24020248,24020338-24020438,
24020533-24020610,24020707-24020952,24021063-24022253
Length = 1031
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Frame = +1
Query: 193 KRIENSIALRSTTGACLGPGEQSPSNGVSTASS-----QQPTPVPHQ 318
+R+ N LR A +PS G+ST + P P PHQ
Sbjct: 5 RRLANRALLRRLLAAATAESPAAPSRGISTLAKGSRPRAPPRPAPHQ 51
>01_05_0086 -
18009957-18010107,18010428-18010557,18010700-18010877,
18011032-18011141,18011217-18011332,18011449-18011710,
18012345-18012660,18012685-18012927
Length = 501
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 262 PSNGVSTASSQQPTPVPHQPGKVRQMFEERRTKAG 366
P +G + S+Q +P PH+P R+ RR + G
Sbjct: 13 PPSGGNLHGSRQSSPPPHRPDPRRRRRRRRRRRRG 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,281,459
Number of Sequences: 37544
Number of extensions: 331427
Number of successful extensions: 1149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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