Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0376.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    32   0.51 
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)                 31   0.68 
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)                    31   0.90 
SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)                   31   1.2  
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       31   1.2  
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  31   1.2  
SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)                    30   2.1  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_40137| Best HMM Match : M-inducer_phosp (HMM E-Value=0.68)          28   8.4  
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 32/124 (25%), Positives = 48/124 (38%)
 Frame = +1

Query: 163 GQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPVPHQPGKVRQMF 342
           G   T +TT   +  ++   + T + + P   +PS+  ST +    TP+ H+P       
Sbjct: 358 GAAITTSTTASSVATTVTTTTATSSSMLPN--TPSSSPSTGTQPSSTPI-HEPPTQGTTL 414

Query: 343 EERRTKAGIDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTTSTRVIVEKRSQKTHKQSAL 522
               T         L+  H++  T RKTL    +K   ST ST V         H  S  
Sbjct: 415 VTMETSTS-----HLKSSHHSRPTTRKTLFT--SKTPTSTLSTSVTSVTPGHYVHHSSVS 467

Query: 523 IALR 534
            A R
Sbjct: 468 PAPR 471


>SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1289

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
 Frame = +1

Query: 139 RLQTASNAGQISTETTTRKRIENSIALRSTTGACLGPGEQSPS-------NGVSTASSQQ 297
           RL   SN+   STE+          ++ + T      GE+  +       + V+   S  
Sbjct: 566 RLSLISNSSSTSTESDLSSGASELQSIHTPTVTVTSHGEKHSNFNFDEIDDDVTPTPSPT 625

Query: 298 PTPVPHQPGKVRQMFEERRTKAGIDKSYPLQPIHNTERTNRKTLPN 435
           PTP P       + +++ R  A I ++  L+P+ N +  N    PN
Sbjct: 626 PTPTPTPAVTPNKEYKQNRGLASISEA--LEPVENADIRNNNFQPN 669


>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
          Length = 623

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 1/131 (0%)
 Frame = +1

Query: 142 LQTASNAGQISTETTTRKRIENSIALRSTTGACLGP-GEQSPSNGVSTASSQQPTPVPHQ 318
           L+T   + +  ++T   K  ++      T  A   P G         T    +P P    
Sbjct: 109 LRTKVTSSKTESDTDVNKEFDSDDDREETIDASKNPDGSSDVDEPQETPQPDKPKPTTPW 168

Query: 319 PGKVRQMFEERRTKAGIDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTTSTRVIVEKRSQ 498
             K+R +  + + K  ++   PL+P+      N+K  P+G A V  S+ S      KR+ 
Sbjct: 169 TCKMRGLPFKAKDKHILEFFSPLKPVAIRFVMNKKGQPSGCAFVDFSSKSDLEKALKRN- 227

Query: 499 KTHKQSALIAL 531
           K + Q   I L
Sbjct: 228 KDYLQGRYIEL 238


>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
 Frame = +1

Query: 226 TTGACLGPGEQSPSNGVS---TASSQQ---PTPVPHQPGKVRQMFEERRTKAGIDKSYPL 387
           T   C+   E+ PS       TA   Q   PTP P+QP    Q  ++      I K+   
Sbjct: 685 TVFPCVKHNEKDPSADKDVHDTAQQHQHPTPTPTPYQPVSTVQYIDQYGDDNDIRKTQRQ 744

Query: 388 QPIHNTERTNRKTLP 432
             ++ T+  N  TLP
Sbjct: 745 TKMYTTQHNNTSTLP 759


>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
          Length = 1164

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
 Frame = +1

Query: 235  ACLGPGEQSPSNGVSTASSQQPTPVPH--QPGKVRQMFEERRTKAGIDKSYPLQPIHNTE 408
            AC GPG  S + G   +SS       H  +   +R + +E + +A  +K   L  I +++
Sbjct: 966  ACTGPGCGSGTQGFGISSSSTAVEGKHDSENHDLRSLKQEEQQRAESEKPDVL-IIQDSD 1024

Query: 409  RTNRKTLPNGYAKV-SNSTTSTRVIVEKRS 495
                + +P   A++ SNS T + VI + +S
Sbjct: 1025 DIQNQNIPPTRARIKSNSNTPSPVISDGKS 1054


>SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)
          Length = 1153

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 223 STTGACLGPGEQSPSNGVSTASSQQPTPVPHQPGKVRQMFEERRTK 360
           STT   + PG     NG  T++  Q   + H P ++ ++   R T+
Sbjct: 321 STTSTTVTPGSSPQINGFCTSTDSQYAEIFHFPSRISEIIPSRPTR 366


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 397  HNTERTNRKTLPNGYAKVSNSTTSTRVIVEKRSQKTHKQSALI-ALRN 537
            ++T     K +P+  + V+N+T +   +V +R++  H+QS  I A RN
Sbjct: 1143 NSTRHIANKRVPDAVSSVTNATCNALTVVTQRNEDQHRQSFRISASRN 1190


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 139 RLQTASNAGQISTETTTRKRIE-NSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPVPH 315
           RL  +S   Q S ET  +++ E   +  RS + A  GP   +PSN  S   S   +P   
Sbjct: 568 RLGESSKDHQKSEETVKKQKKEIMELENRSGSPASFGPSSPAPSNDTSPIPSGASSPAAQ 627

Query: 316 Q-PGKVRQMFEE 348
           + P    + F E
Sbjct: 628 RIPASAEREFRE 639


>SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)
          Length = 415

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 151 ASNAGQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTP 306
           ++N+  I+ ETT  K++EN    RS T +     E++PSN +   S  +  P
Sbjct: 306 STNSMLITGETTEDKKMENQAVPRSDTNS----QEETPSNTIGIPSDPESNP 353


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 151  ASNAGQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTP 306
            ++N+  I+ ETT  K++EN    RS T +     E++PSN +   S  +  P
Sbjct: 951  STNSMLITGETTEDKKMENQAVPRSDTNS----QEETPSNTIGIPSDPESNP 998


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 216  FTKHNRRVPWTG*AISQQWR*YSLIAAADACTSSARKGSS--NVRRETHKSRH*QELPAT 389
            FT HN+   W G A+SQ  +   +  +++    S     S  ++  ET  S H  +LP +
Sbjct: 1980 FTYHNQEQMWKGSALSQPVQLKGMQVSSEDIGMSLTPSVSGGHMTAETTPSSH--QLPKS 2037

Query: 390  ADTQHRKNEPEDITERI 440
                H  N P  + +++
Sbjct: 2038 QGQWHSSNIPSSMAQQV 2054


>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 146 RLLQMQARFQQKQLQERELKIASLYEAQQ 232
           +LLQ Q + Q K+LQE +LK     E QQ
Sbjct: 408 KLLQEQQKLQHKKLQEEKLKHQKQEEEQQ 436


>SB_40137| Best HMM Match : M-inducer_phosp (HMM E-Value=0.68)
          Length = 458

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 191 ERELKIASLYEAQQ--ARALDRVSNLPAMALVQPHRSSRRLYLISQERFVKCSKRDAQKQ 364
           E ELK + L +++Q  A   DRV+   A  LV  H  S  L  ++ E+     +RD    
Sbjct: 5   ELELKQSYLLDSEQTWAERFDRVATENAALLVALHARSDELRKLAIEKMALIRERDELAA 64

Query: 365 AL 370
           AL
Sbjct: 65  AL 66


>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 30/135 (22%), Positives = 59/135 (43%)
 Frame = +1

Query: 112 HFYQNGKGRRLQTASNAGQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASS 291
           H Y N + +R   +S++ + S  +  RKR  +S +  STT +       SP   +   SS
Sbjct: 29  HDYGNNRKQRNAQSSSSTETSQRSRARKRQSSSSS--STTSS-------SPERNIKKKSS 79

Query: 292 QQPTPVPHQPGKVRQMFEERRTKAGIDKSYPLQPIHNTERTNRKTLPNGYAKVSNSTTST 471
           + P     Q         +R+TK    K + L+  +   +T+  +  +   + S + T +
Sbjct: 80  KAP---KRQSSSSSSSSPKRKTK---KKQHRLKSGNTRSQTSSSSAASSPERKSGNKTHS 133

Query: 472 RVIVEKRSQKTHKQS 516
           R   + +S++ +  S
Sbjct: 134 RSRSKTKSKRLYSSS 148


>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 247 PGEQSPSNGVSTASSQQPTPVPHQP 321
           P +  PS+ V+T S++ PTP P  P
Sbjct: 411 PQDSLPSSRVTTDSAKPPTPAPDTP 435


>SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +1

Query: 148 TASNAGQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPVPHQPGK 327
           T +    +ST T T K  E++    +TT     P     ++ +   ++  PTP P    +
Sbjct: 255 TKATTTSVSTTTATTKEEESTTTAETTTVTATKPLSSEETSTMLPTTA--PTPKPDTECQ 312

Query: 328 VRQMFEERRTK 360
           V+ M  +R  K
Sbjct: 313 VQTMLTKRYEK 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,895,489
Number of Sequences: 59808
Number of extensions: 381071
Number of successful extensions: 1317
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)