Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0376.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept... 36 0.034
At1g23850.1 68414.m03008 expressed protein 32 0.32
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR... 32 0.42
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 31 0.56
At1g15780.1 68414.m01893 expressed protein 31 0.73
At2g33570.1 68415.m04114 expressed protein 30 1.3
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 30 1.7
At2g25800.1 68415.m03096 expressed protein 30 1.7
At5g19190.1 68418.m02285 expressed protein predicted protein, Ar... 29 2.2
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 29 2.2
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t... 29 3.0
At1g29700.1 68414.m03629 expressed protein 28 5.2
>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 694
Score = 35.5 bits (78), Expect = 0.034
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Frame = +1
Query: 121 QNGKGRRLQTASNAGQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQP 300
+NGKGRRL+ ++ T+ + E+S + L G + V SS+ P
Sbjct: 366 KNGKGRRLRKKFQVSDSDSDETSARADESS---NEDSVEVLNNGNEPKIAKVH--SSESP 420
Query: 301 TPVPHQPGKVRQMFEERRTKAGIDKSYPLQPIHNTERT--NRKTLPNGYAKVSNSTTSTR 474
P K R+ E A +K++ + NT +T NR+ P AK+S
Sbjct: 421 LPSRVTRSKARKSTLESGEPAKCEKTFEAKI--NTHKTLDNREDKPLDDAKLSPVQKDCE 478
Query: 475 VIVEKRSQKTHKQSALIAL 531
++ +K+ K +S+ I +
Sbjct: 479 ILSKKKRNKERSKSSAIII 497
>At1g23850.1 68414.m03008 expressed protein
Length = 354
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 554 IVYFLLFLNAMRADCLCVFCDRFSTMTLVLVVEFETFAYPFGNVFRFVLSVL 399
++ FL+F AMR C C C S VL F GN+ ++V V+
Sbjct: 276 MLVFLVFAIAMRMPCFCFKCTESSNGNRVLYTSFYVGLICVGNMIKWVACVV 327
>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 981
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 247 PGEQSPSNGVSTASSQQPTPVPHQPG--KVRQMFEERRTKAGIDKSYPLQPIHNTERTNR 420
P PS P+ V + G V + + + + + K YPL +R
Sbjct: 602 PAPSEPSFPQRPPVQAPPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHR 661
Query: 421 KTLPNGYAKVSNSTTSTRVIVEKR 492
P+ ++K+ NST S R++ E R
Sbjct: 662 PRHPSFFSKIDNSTQSDRMLHENR 685
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 31.5 bits (68), Expect = 0.56
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 163 GQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPVPHQPGKVRQMF 342
G+I T R R ++ L ACL P E + G+ A S++ +P+ GK + F
Sbjct: 739 GEIQTLGMLRSRFQS---LPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQF 795
Query: 343 EE 348
+
Sbjct: 796 SQ 797
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +2
Query: 152 LQMQARFQQKQLQERELKIASLYEAQQARALDRVSNLPAM 271
+Q++ +FQQ+Q+Q+++L+ + QQ +A + + L M
Sbjct: 838 MQLKQQFQQRQMQQQQLQARQQQQQQQLQARQQAAQLQQM 877
>At2g33570.1 68415.m04114 expressed protein
Length = 496
Score = 30.3 bits (65), Expect = 1.3
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 3/138 (2%)
Frame = +1
Query: 253 EQSPSNGVSTASSQQPTPVPHQPGKVRQMFEERRTKAGIDKSYPLQPIHNTERTNRKTLP 432
EQ+P + V + P Q G + +F++ RTK D+ Y +Q N T
Sbjct: 360 EQNPMSSVLCINDSSQD-YPRQWGFEKLLFKDSRTKIRRDRKYAIQ-AKNAFATGVHMSE 417
Query: 433 NGYAKVSNST-TSTRVIVEKRSQKTHKQSALIALRNS--KK*TIW*TAPVISTTIHEDDI 603
N K + T T R + H++ L NS KK T++ P + + +
Sbjct: 418 NIVGKTLHKTETKIRYYHYHNTITVHEELCREMLPNSAKKKVTLYNKLPYVYDDNMKKLV 477
Query: 604 SAVKTFRFHKATAKIGTD 657
+K F K+GTD
Sbjct: 478 KTIKEFE----QKKLGTD 491
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 274 VSTASSQQPTPVPHQPGKVRQMFEERRTKAGIDKSYPLQ--PIHNTERTNRKTLPNGYAK 447
+ S +PTP+P+ + + E+ R +DKS PL+ I + + + T+P+
Sbjct: 705 MDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDS 764
Query: 448 VS 453
VS
Sbjct: 765 VS 766
>At2g25800.1 68415.m03096 expressed protein
Length = 996
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 151 ASNAGQISTETTTRKRIENSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPV 309
AS A Q S +T +++ ++ LRS++ G + S S S S++PT V
Sbjct: 93 ASPAIQRSLTSTAASKMKKALGLRSSSSLSPGSNKSSGSASGSNGKSKRPTTV 145
>At5g19190.1 68418.m02285 expressed protein predicted protein,
Arabidopsis thaliana
Length = 154
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Frame = +1
Query: 253 EQSPSNGVSTASSQQPTPVPHQPGKVRQ--MFEERRTKAGIDKSYPLQPIHNTERTNRKT 426
EQS GV S QP PH K + F ++ + Q H R+ T
Sbjct: 63 EQSKGTGVFIPKSSQPRRRPHHHQKQGRYSSFNAKQQHSLHQNRQEYQQNHENSRSTLTT 122
Query: 427 LPNGYAKVSNSTTSTRVIVEKRSQK 501
N K + ++TS + +RS +
Sbjct: 123 HNNNNNKSNMNSTSVHASIPRRSYR 147
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 286 SSQQPTPVPHQPGKVRQMFEERRTKAGIDKSYPL-QPIHNTERTNRKTLPN 435
S QQP PHQP +V+ + ++ T + P+ QP ++ + + +T P+
Sbjct: 345 SPQQPLAHPHQPTRVQGLVNQKVTSPVMPSQPPVAQPGNHAKTVSAETEPS 395
>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
T15B16.10 similar to A. thaliana CHP-rich proteins
encoded by T10M13, GenBank accession number AF001308
Length = 667
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 243 KARACCAS*SDAIFNSLSCSCFC*NLACI*SSLEPPPFSILVEMTHETRKN 91
K R C D +F S F ++ C+ L PPP S+L TH+ + N
Sbjct: 209 KCRLCGRKIDDKLFYHCSSCNFTLDMRCV---LNPPPKSVLDLKTHDHQLN 256
>At1g29700.1 68414.m03629 expressed protein
Length = 350
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 205 NSIALRSTTGACLGPGEQSPSNGVSTASSQQPTPVPHQPGKVRQMFEERRTKAGI 369
+ + +++T G LGP Q P NG S + + ++P V M + +A I
Sbjct: 204 SKVRVKATAGPVLGPPWQRPENGYLLVSPEDQISLYYEPHCVCNMELLKNERADI 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,223
Number of Sequences: 28952
Number of extensions: 258226
Number of successful extensions: 891
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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