Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0375.Seq
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    28   0.98 
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   2.3  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   9.1  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   9.1  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   9.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.1  

>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +1

Query: 49  NDDEGRVGEMVTADLNEAATESL--GGVAEPAIRNEIIPLANVISKTGSQIETTHANFRN 222
           +D+E    E V  +  +++ E       A   I   +  L + +SK G QIET  A+   
Sbjct: 241 SDEEESDNEQVNDEKKQSSEEDTTENNSAAEVIDETVNDLESAVSK-GLQIETQPASHDG 299

Query: 223 ELSPKVLSNEAWKISGFRQARPSQFP*EI 309
           E+  +V   E  K+S       SQ   E+
Sbjct: 300 EVDGEVKEEEENKVSSSSNIEASQSSLEV 328


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
 Frame = +1

Query: 7    DTELTKKAPNKNLANDDEGRVGEMVTADLNEAATESLGGVAEPAIRN-EIIPLANVISKT 183
            DT L     N N+ N D G   E+     NE   +++     P + N E I L++ +  T
Sbjct: 839  DTSLGASTINTNILNQDSGPNEEIPVG--NEPEFDTM-----PTLPNVEPISLSDFLKMT 891

Query: 184  GSQI--ETTHANFRNELSPKVLSNEAWKISGFRQARPSQFP-*EI*KHS*NPAEEFI 345
            G +     T A  R  L P    N+   I    ++   QFP  E+ K S    +++I
Sbjct: 892  GIEFLDNLTIAKRRETLLPNAEENKKCSIQELLESFYIQFPLLELYKFSCQQLQDYI 948


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 154 IPLANVISKTGSQIETTHANFRNEL 228
           + L+NV   T  QI T+H  FR+E+
Sbjct: 143 LSLSNVQDPTVMQINTSHHRFRSEV 167


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -3

Query: 269 PEIFHASLLRTLGLNSLRKFACVVSIWLPVFEITLAKGIISLRIAGSATPPKLSVAASFK 90
           P+I H   +  +G+    + A  + I  P     L K ++S  +  S   PK+   ASFK
Sbjct: 283 PQILHGECV-AIGMVKEAELARYLGILKPNAVGRLTKCLVSYNLPISVNDPKVKKYASFK 341


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 132 FRNSSQTFGSSFIQICSHHFSYATFIIISQVFI 34
           FR     F S F+ IC   FSY   + I +  I
Sbjct: 137 FRQFFVLFSSDFLMICLSFFSYGLQVCIEKNMI 169


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 161  KGIISLRIAGSATPPKLSV-AASFKSAVTISPTRPSSSLA 45
            +G  S  IA +A+   LS  AAS  S VT S T  SSS A
Sbjct: 1105 EGTASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSA 1144


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +1

Query: 91   LNEAATESLGGVAEPAIRNEIIPLANVISKTGSQIETTHANFRNELSPKVLSNEAWKI 264
            LNE A  SL   AE + +N +      + +     +TT+A+ +NEL+  V+  + +++
Sbjct: 1643 LNEHAESSLSK-AERS-KNYLTGRLQEVEELARGFQTTNADLQNELADAVVKQKEYEV 1698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,615
Number of Sequences: 5004
Number of extensions: 43588
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)