Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0375.Seq
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   4.2  
SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)                  28   5.5  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        28   5.5  
SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)                 28   7.3  
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 428 RSIGNGTKKPCPRCGHSCCFKDSSMR*FF*MKNRKHF--VWI 547
           + +  GT +PC R GH+ C  +  M  F   + +  F  VW+
Sbjct: 191 KGVATGTIQPCERAGHAACIVEDRMIVFGGAQRQSRFNDVWV 232


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
 Frame = +1

Query: 7    DTELTKKAPNKNLANDDEGRVGEMVTADLNEAAT-----ESLGGVAEPAIRNEIIPLANV 171
            DT LTK A N ++ +D+   + ++VT  L +  +     E L   +   +R  +  L  +
Sbjct: 1596 DTTLTKSA-NTSMISDEGLELSQIVTDSLFQGPSLDEEGEELVIDSGSKLRTAVNKLLEM 1654

Query: 172  ISKTGSQIETTHANFRNELSPKVLSNEAWKISGFRQARPSQF 297
            I+ T  Q++   A   +   P    N      GF   R SQF
Sbjct: 1655 ITLTTRQVDNAQAIVTSLSQPHPCINRQCLTKGFIPFRLSQF 1696


>SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)
          Length = 878

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 389 RRVEKKSIQRNPRRSIGNGTKKPCPRCGHS 478
           RR +K+  QRNP+R      +K C RCG S
Sbjct: 28  RRNQKQHNQRNPKRE----DRKTCARCGSS 53


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 492 SLKQQECPHLGHGFL 448
           SLKQ  CPH G GFL
Sbjct: 736 SLKQNVCPHCGKGFL 750


>SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)
          Length = 557

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +2

Query: 362 TSKTAVDVKRRVEKKSIQRNPRRSIGNGTKKPC 460
           ++K  +D+K ++ K  I+ NP + + +G +  C
Sbjct: 307 STKNVIDLKPQIAKNGIKSNPVKVLSDGVEAKC 339


>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 389 RRVEKKSIQRNPRRSIGNGTKKPCPRCGHS 478
           RR +K+  QRNP+R      +K C RCG S
Sbjct: 293 RRNQKQHNQRNPKRE----DRKTCGRCGSS 318


>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 452 KPCPRCGHSCCFKDSSM 502
           KP PR GHS C  DS +
Sbjct: 596 KPTPRSGHSSCLLDSKL 612


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 128 ATPPKLSVAASFKSAVTISPTRPSSSLAK 42
           A+PPK   AAS  S    SP++ +SSLA+
Sbjct: 2   ASPPKARTAASKDSPRKPSPSKQTSSLAR 30


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +1

Query: 13  ELTKKAPNKNLANDDEG-RVGEMVTA----DLNEAATESLGGVAEPAIRNEIIPLANVIS 177
           E   ++ NK +  +++  R+ E + A     +N  +++   G+    + NE+  +  V+S
Sbjct: 464 ETVNESTNKLMKMEEQNTRLQEQIKAVEVERVNLVSSKQEHGIVRETLENELSEVRAVLS 523

Query: 178 KTGSQIETTHANFRNELSPKVLS 246
           K   + +TT  +    L  K LS
Sbjct: 524 KFQEKYQTTKQDLDQALEAKTLS 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,512
Number of Sequences: 59808
Number of extensions: 295970
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)