Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0375.Seq
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.3  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   5.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 479 CCFKDSSMR*FF*MKNRKHFVWIY 550
           C FK++    F  M    H++W+Y
Sbjct: 92  CFFKNAKKVTFHEMSIPNHYLWLY 115


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 141 NCRFRNSSQTFGSSFIQICSHH 76
           N   ++  + FG+ F Q C HH
Sbjct: 4   NFTLQSLKKDFGTYFQQYCLHH 25


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 127 AEPAIRNEIIPLANVISKTGSQIETTHANFRN 222
           A+P   + +I    ++S TG  +  +H  FR+
Sbjct: 98  ADPQYSSAVINTNVIVSHTGEVVWLSHGIFRS 129


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 431 SIGNGTKKPCPRCGHSC 481
           SI  GT   C  CG SC
Sbjct: 27  SIRQGTTSYCLGCGDSC 43


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 13  ELTKKAPNKNLANDDEGRVGEMVTAD 90
           E+T +   K L+N +  +VG+ VT +
Sbjct: 424 EITWELDGKRLSNTERLQVGQYVTVN 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,745
Number of Sequences: 438
Number of extensions: 3065
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)