Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0375.Seq
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi...    31   0.85 
At4g28080.1 68417.m04027 expressed protein                             30   1.5  
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ...    29   2.6  
At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family ...    28   6.0  
At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family ...    28   6.0  

>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
           to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 519

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +1

Query: 88  DLNEAATESLGGVAEPAIRNEIIPLANVISKTGSQIETTHANFRNELSPKVLSNEAWKIS 267
           D+ E A   LG VA  +I+       + +  +G+ I   H    N  +  +L N  W +S
Sbjct: 171 DVREQAIWGLGNVAGDSIQ-----CRDFVLNSGAFIPLLH-QLNNHATLSILRNATWTLS 224

Query: 268 GFRQARPSQFP*EI*KH 318
            F + +PS  P ++ KH
Sbjct: 225 NFFRGKPSP-PFDLVKH 240


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = +1

Query: 4    NDTELTKKAPNKNLANDDEGRVGEMVTADLNEAATESLGGVAEPAIRNEIIPLANVISKT 183
            +DT L  K+P  N +N  E  +G  +  DL +A  +++ G  E     +  P ++V +  
Sbjct: 1334 SDTCLLNKSPTANDSNGSESVIGVKLQKDLCDAELKTVDGETENLPNGDSSPKSSV-AAD 1392

Query: 184  GSQIETTHANFRNELSPKV 240
            G + +   A  + E+S K+
Sbjct: 1393 GEKQDACEA--QKEMSKKL 1409


>At3g66652.1 68416.m00776 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 980

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 374 AVDVKRRVEKKSIQRNPRRSIGNGTKKPCPRCGHSCCFKDSS 499
           A+ +KR  +  ++    RRS  + +K+ C R G++   KD+S
Sbjct: 394 AISIKRGEDSGTMHSRHRRSHEDSSKRHCGRAGYARYVKDAS 435


>At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family
           protein similar to SP|Q9Y2Y1 DNA-directed RNA
           polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) (RNA
           polymerase III C11 subunit) {Homo sapiens}; contains
           Pfam profiles PF02150: RNA polymerases M/15 Kd subunit,
           PF01096: Transcription factor S-II (TFIIS)
          Length = 106

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 446 TKKPCPRCGH-SCCFKDSSMR 505
           T+ PCPRCGH    FK   +R
Sbjct: 64  TEAPCPRCGHDKAYFKSMQIR 84


>At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family
           protein similar to SP|O13896 DNA-directed RNA
           polymerases III 12.5 kDa polypeptide (EC 2.7.7.6)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF02150: RNA polymerases M/15 Kd subunit, PF01096:
           Transcription factor S-II (TFIIS)
          Length = 106

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 446 TKKPCPRCGH-SCCFKDSSMR 505
           T+ PCPRCGH    FK   +R
Sbjct: 64  TEAPCPRCGHDKAYFKSMQIR 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,304
Number of Sequences: 28952
Number of extensions: 222333
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)