Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0374.Seq
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 32 0.098
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.6
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 27 2.8
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 3.7
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 27 3.7
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 6.4
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 8.5
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 8.5
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 8.5
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 31.9 bits (69), Expect = 0.098
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +1
Query: 526 KEGDYELDPKLKKDAVEVFDADFEKVN---FDNGAAAAGLINKWVENKTNERI 675
K+G L+PK+ + V + +++EK++ FD+ GL++ + N+ N +
Sbjct: 1277 KDGSGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETTEGLLSSYCSNEWNREV 1329
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 207 TKLWQISSIIINPLVYYDSSIIFTSTEENKIL 112
+K W +S++++PL + S I+F KI+
Sbjct: 215 SKCWAFTSLLVDPLHFMFSQIVFEDLSGKKIM 246
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -1
Query: 714 VNESEAVFTQEIFNAFIGFIFNPFVY*AGGCGSVIEVNFFKICIEYLDSVLLKF 553
++ + + EI A I FI + A CG ++ NF + I Y+D VL KF
Sbjct: 7 IDPLQIILCTEIDEACIQFIKSQIEGIARACGPRMQANFEGVLIPYVD-VLGKF 59
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 508 TNKIYIKEGDYELDPKLKKDAVEVFDADFEKVN 606
++ Y+K+G +EL + D V D DF+ V+
Sbjct: 1258 SDNFYLKQGGFELLDTIITDFSNVMDPDFDDVS 1290
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 604 NFDNGAAAAGLINKWVENKTNERIKDLL-SEDSLRFVYAFGFWVNA 738
N G + GL+ V +TNE +K LL E + ++ G W++A
Sbjct: 278 NVITGTSGGGLLAALVCTRTNEELKQLLVPELASKYQSDIGNWLDA 323
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/62 (22%), Positives = 24/62 (38%)
Frame = +1
Query: 526 KEGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSLR 705
+ G Y P K ++ + NF I KWV+ + +K + SE S
Sbjct: 21 RSGHYLYKPNGKTSCCSLYTIRLDSYNFKIAKEQKKAIKKWVKYVNGKPLKPMKSEISTD 80
Query: 706 FV 711
++
Sbjct: 81 YL 82
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 118 NSITTGTIEVVVPT 77
N T+GT+EVV+PT
Sbjct: 218 NGTTSGTVEVVIPT 231
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 118 NSITTGTIEVVVPT 77
N T+GT+EVV+PT
Sbjct: 253 NGTTSGTVEVVIPT 266
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 118 NSITTGTIEVVVPT 77
N T+GT+EVV+PT
Sbjct: 393 NGTTSGTVEVVIPT 406
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 245 SQYDSKALSSAITKFSAKFCNELDKKKNVVS 337
S DSK+L + F++K C E+DKK +++
Sbjct: 9 SSCDSKSLG--VDDFTSKRCREIDKKALLIT 37
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 8.5
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -1
Query: 450 ERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFAENLVIAE 271
E ++ S IPR+ + A I K+S +G+ T LS S ENL I
Sbjct: 196 EAVLRISCIPRVEDWKRAAADYKKSSIPLGKFS--DGETQTMPSLSPS----TENLQINN 249
Query: 270 DKAFESY*EQGSLFP 226
D +++ + S FP
Sbjct: 250 DVTYQAATDNSSTFP 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,248
Number of Sequences: 5004
Number of extensions: 58659
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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