Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0374.Seq
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0044 - 25150322-25151260 32 0.55
03_05_0294 + 22855503-22855946,22856346-22856399 31 1.3
11_02_0011 - 7337618-7338496,7338596-7338991 29 3.9
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 29 5.1
01_06_0824 - 32243495-32244319,32244449-32244859 29 5.1
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 28 6.7
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 28 6.7
01_01_1152 + 9170628-9171899 28 6.7
11_02_0012 - 7346282-7347136,7347234-7347593 28 8.9
02_04_0632 + 24614659-24615528,24615636-24616133 28 8.9
>05_06_0044 - 25150322-25151260
Length = 312
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 529 EGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLS 690
+ L+P A VF A N AAA IN+W ++T +KD+LS
Sbjct: 6 DASLRLNPAFADTAASVFKAAVRSAG--NPAAARAEINEWFSSQTGGFVKDILS 57
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 326 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDT 442
NV SPLS L+L+ G ++L++ LG+P T
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGT 83
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 541 ELDPKLKKDAVEVFDADFEKVNFDNGAAAAGL-INKWVENKTNERIKDLLSEDSL 702
EL P + A + A NF + INKWV TN+ I ++L + S+
Sbjct: 107 ELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNKLIPEILPDGSV 161
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 311 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTI 445
+ KN+V SP S LAL+ G +ELL LG D +
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDL 71
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 323 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 430
+NV SPLS L+L+ G ++L ++LG P
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGP 70
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 580 FDADFEKVNF-DNGAAAAGLINKWVENKTNERIKDLLSEDSL 702
+ A+ V+F D A IN+W E+ T RIKD L +D++
Sbjct: 125 YRAEARPVSFRDKLEEARREINEWFESATAGRIKDFLPKDAV 166
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = -1
Query: 657 IFNPFVY*AGGCGSVIEVNFFKICIEYLDSVLLKFWVELI----VTLLDVYFV 511
+ +PF+ A G + ++ F C +L +LLKFWV+L+ VT VYF+
Sbjct: 733 LISPFLVTANG---MFVIDLF--CTWFLGLLLLKFWVKLVHWTTVTPFLVYFI 780
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -1
Query: 492 PFIDF--NFDDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNG 340
PF+ F +DD +++R V+S I +SCAGSV+ + ++ +K D G
Sbjct: 84 PFLYFMVQYDDILFHEKRRVTSVTIDFTFGLNSCAGSVI-RDLHIAKQEEDIG 135
>01_01_1152 + 9170628-9171899
Length = 423
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 323 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 430
+N + SPLS LAL+ G ELL LG P
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSP 94
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 314 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTI 445
+ +NVV SP+S LAL+ G +EL+ LG D +
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDL 71
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -1
Query: 423 PRLVNSSSCAGSVVPKVINASKYSA----DNGDD 334
P L+ +G+ PK+ NAS Y+A DNGDD
Sbjct: 75 PSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,676,036
Number of Sequences: 37544
Number of extensions: 329328
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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