Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0374.Seq
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      31   0.97 
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            28   6.9  
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   6.9  
SB_25845| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +1

Query: 511 NKIYIKEGDYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGL-INKWVENKTNERIKDLL 687
           N +++++ D+ +  +      + +DAD   V++      A   +N+WVE +T ++I DL+
Sbjct: 54  NNLFLQK-DFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICDLI 112

Query: 688 S 690
           +
Sbjct: 113 A 113


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = +1

Query: 535 DYELDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLS-EDSLR 705
           DY++D KL  DA +  D +FE+++ +N    A L  + ++ + N++  DL++ ++ LR
Sbjct: 373 DYQVDYKLLLDAKKKLDTEFEELSKNNSEREAVL--RSLQQEKNKKDIDLMTLKEKLR 428


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 113 YHHRYHRSRSTYLSQQIIILSMIVTTMNT 27
           YHH +H   +  +   II +++I+T  NT
Sbjct: 244 YHHHHHHHNNNTIITTIITITIIITINNT 272


>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -1

Query: 519 YFVGTLNVTPFIDFNFDDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNG 340
           Y   ++ +      N DD    D+R  SS+G    V+  +     +    N +KY   N 
Sbjct: 170 YLESSITILTATKNNIDDGNNVDDR--SSNGNNNNVDQDNNDDETITTTTNKNKYDGGNN 227

Query: 339 DDT 331
           DDT
Sbjct: 228 DDT 230


>SB_25845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 213 VLTKLWQISSIIINPLVYYDSSIIFTSTEENKI 115
           +L  +  IS+  +NP++Y+ SS +F S  +N I
Sbjct: 209 MLAGVLAISNSALNPIIYFSSSRLFRSQLKNMI 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,533,715
Number of Sequences: 59808
Number of extensions: 387048
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)