Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0373.Seq
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    27   0.17 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    27   0.17 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    27   0.17 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    27   0.17 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.8  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   2.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.5  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
 Frame = -2

Query: 780 PPKTQNAVNTEIRRAGTFQPQRRSL*RRFQFWCLIFQTPIWVSLRPGPAAATRLSKV*LF 601
           P K     N ++ R   F  +  S  R    WCLIF    WV   P   +  R S++  F
Sbjct: 102 PDKVTVFCNRDLGREKQFIVKLPSAERVAWMWCLIF--AFWV---PQLGSLFRSSRMCFF 156

Query: 600 SKSAIEYLDSVLLKFWVELIVTL-LECIFCWLIKRNTFYRISILTTQPRMMSESCHHPGY 424
             S        L+ F+ E + T+ +  +  +++      + ++LT      +  C  PG 
Sbjct: 157 KSSKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAMLT------NCICFVPGV 210

Query: 423 LGLSIALRVQDQ*FPKL 373
           LGL      + Q F K+
Sbjct: 211 LGLLSRSNKESQRFLKV 227



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 597  KSAIEYLDSVLLKFWVELI 541
            K  +E+L S  + FW +L+
Sbjct: 1222 KGEVEFLSSTEILFWKDLL 1240


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
 Frame = -2

Query: 780 PPKTQNAVNTEIRRAGTFQPQRRSL*RRFQFWCLIFQTPIWVSLRPGPAAATRLSKV*LF 601
           P K     N ++ R   F  +  S  R    WCLIF    WV   P   +  R S++  F
Sbjct: 102 PDKVTVFCNRDLGREKQFIVKLPSAERVAWMWCLIF--AFWV---PQLGSLFRSSRMCFF 156

Query: 600 SKSAIEYLDSVLLKFWVELIVTL-LECIFCWLIKRNTFYRISILTTQPRMMSESCHHPGY 424
             S        L+ F+ E + T+ +  +  +++      + ++LT      +  C  PG 
Sbjct: 157 KSSKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAMLT------NCICFVPGV 210

Query: 423 LGLSIALRVQDQ*FPKL 373
           LGL      + Q F K+
Sbjct: 211 LGLLSRSNKESQRFLKV 227



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 597  KSAIEYLDSVLLKFWVELI 541
            K  +E+L S  + FW +L+
Sbjct: 1222 KGEVEFLSSTEILFWKDLL 1240


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
 Frame = -2

Query: 780 PPKTQNAVNTEIRRAGTFQPQRRSL*RRFQFWCLIFQTPIWVSLRPGPAAATRLSKV*LF 601
           P K     N ++ R   F  +  S  R    WCLIF    WV   P   +  R S++  F
Sbjct: 102 PDKVTVFCNRDLGREKQFIVKLPSAERVAWMWCLIF--AFWV---PQLGSLFRSSRMCFF 156

Query: 600 SKSAIEYLDSVLLKFWVELIVTL-LECIFCWLIKRNTFYRISILTTQPRMMSESCHHPGY 424
             S        L+ F+ E + T+ +  +  +++      + ++LT      +  C  PG 
Sbjct: 157 KSSKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAMLT------NCICFVPGV 210

Query: 423 LGLSIALRVQDQ*FPKL 373
           LGL      + Q F K+
Sbjct: 211 LGLLSRSNKESQRFLKV 227



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 597  KSAIEYLDSVLLKFWVELI 541
            K  +E+L S  + FW +L+
Sbjct: 1222 KGEVEFLSSTEILFWKDLL 1240


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
 Frame = -2

Query: 780 PPKTQNAVNTEIRRAGTFQPQRRSL*RRFQFWCLIFQTPIWVSLRPGPAAATRLSKV*LF 601
           P K     N ++ R   F  +  S  R    WCLIF    WV   P   +  R S++  F
Sbjct: 102 PDKVTVFCNRDLGREKQFIVKLPSAERVAWMWCLIF--AFWV---PQLGSLFRSSRMCFF 156

Query: 600 SKSAIEYLDSVLLKFWVELIVTL-LECIFCWLIKRNTFYRISILTTQPRMMSESCHHPGY 424
             S        L+ F+ E + T+ +  +  +++      + ++LT      +  C  PG 
Sbjct: 157 KSSKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAMLT------NCICFVPGV 210

Query: 423 LGLSIALRVQDQ*FPKL 373
           LGL      + Q F K+
Sbjct: 211 LGLLSRSNKESQRFLKV 227



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 597  KSAIEYLDSVLLKFWVELI 541
            K  +E+L S  + FW +L+
Sbjct: 1222 KGEVEFLSSTEILFWKDLL 1240


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 137 LQLRKIKFYHHRYHRSRSTYLSQQIIILSMIVTTM 33
           LQ   IK  +HR HR        ++ +L +I+ T+
Sbjct: 392 LQTMNIKVNYHRVHRKIMVQSLGRVGVLVVIIGTL 426


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 137 LQLRKIKFYHHRYHRSRSTYLSQQIIILSMIVTTM 33
           LQ   IK  +HR HR        ++ +L +I+ T+
Sbjct: 117 LQTMNIKVNYHRVHRKIMVQSLGRVGVLVVIIGTL 151


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 788 RFGPQKPKTPLTRKFGG 738
           +F PQ P +P++   GG
Sbjct: 37  QFSPQGPNSPVSFSMGG 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,033
Number of Sequences: 336
Number of extensions: 4239
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)