Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0373.Seq
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    30   0.43 
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    26   7.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   9.4  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   9.4  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 505  NEPTKYTFKEGDYELDPKLKKDAVEVFD 588
            + P++Y+F  GDYE DP+      ++FD
Sbjct: 1739 HSPSEYSFDSGDYEFDPQRSYYYDDLFD 1766


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 207 TKLWQISSIIINPLVYYDSSIIFTSTEENKIL 112
           +K W  +S++++PL +  S I+F      KI+
Sbjct: 215 SKCWAFTSLLVDPLHFMFSQIVFEDLSGKKIM 246


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 716 LWGWKVPALRISVLTAF 766
           +W WK P  RIS+L  F
Sbjct: 107 IWSWKHPLYRISILGLF 123


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 118 NSITTGTIEVVVPT 77
           N  T+GT+EVV+PT
Sbjct: 218 NGTTSGTVEVVIPT 231



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 118 NSITTGTIEVVVPT 77
           N  T+GT+EVV+PT
Sbjct: 253 NGTTSGTVEVVIPT 266



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 118 NSITTGTIEVVVPT 77
           N  T+GT+EVV+PT
Sbjct: 393 NGTTSGTVEVVIPT 406


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 245 SQYDSKALSSAITKFSAKFCNELDKKKNVVS 337
           S  DSK+L   +  F++K C E+DKK  +++
Sbjct: 9   SSCDSKSLG--VDDFTSKRCREIDKKALLIT 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,337,367
Number of Sequences: 5004
Number of extensions: 70342
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)