Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0373.Seq
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_37484| Best HMM Match : DUF746 (HMM E-Value=4.1)                    29   5.7  
SB_34875| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            28   7.5  
SB_25845| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1148

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 661 NGGLKN*TPELKPPLKRSSLGLESAGPPNFRVNGVLG 771
           N  L N  P L PP+  S+ GL   GP N  +   +G
Sbjct: 257 NNILSNLNPSLLPPMAASNTGLLGNGPSNSALQPTIG 293


>SB_37484| Best HMM Match : DUF746 (HMM E-Value=4.1)
          Length = 465

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 603 FSKSAIEYLDSVLLKFWVELIVTL--LECIFCW 511
           FSK++ E L ++LLKF ++ +  L  ++ + CW
Sbjct: 238 FSKASAELLQNILLKFVIDSLSVLYDIQRVVCW 270


>SB_34875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = -2

Query: 576 DSVLLKFW--VELIVTLLECIFCWLIK-RNTFYRISILTTQPRMMSESCHHP 430
           D+VLLK +  V L++T++  I     +  N   RIS L  +PRMMSE  + P
Sbjct: 13  DAVLLKKFGGVGLVMTIVFTIAPLARQIENQLKRISHLRIEPRMMSEQFNRP 64


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 113 YHHRYHRSRSTYLSQQIIILSMIVTTMNT 27
           YHH +H   +  +   II +++I+T  NT
Sbjct: 244 YHHHHHHHNNNTIITTIITITIIITINNT 272


>SB_25845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 213 VLTKLWQISSIIINPLVYYDSSIIFTSTEENKI 115
           +L  +  IS+  +NP++Y+ SS +F S  +N I
Sbjct: 209 MLAGVLAISNSALNPIIYFSSSRLFRSQLKNMI 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,997,413
Number of Sequences: 59808
Number of extensions: 497369
Number of successful extensions: 1073
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)