Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0371.Seq
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   7.0  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   7.0  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   7.0  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   9.3  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   9.3  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   9.3  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 564 LASQRRLANSIRNSPNYV 511
           +AS+R LA  I NSP+YV
Sbjct: 97  IASERDLARKILNSPSYV 114


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 635 WRTLSGEQRGYTFGSWPIGLGIR 703
           WR L G   GY F  +P+ L  R
Sbjct: 640 WRKLLGMMEGYDFSGYPVVLDSR 662


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 DIGQVLKAARLLCKPPQQVDFEDEQEMRF 406
           ++G+V ++  L+C  PQ  DF D Q + F
Sbjct: 349 EVGEVEQS--LVCNEPQSTDFNDIQRLLF 375


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 499 HRQRHIVWAIPDGVSETS 552
           H+ RH++W  P+G+   S
Sbjct: 306 HKARHLIWLEPEGLDPNS 323


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 257 VPAKNPHAPPPVSVKTTGPVWD 322
           +P  +P  P  +  +T GP+WD
Sbjct: 671 IPRAHPQLPKNLLSQTAGPLWD 692


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 381 SRTNKKCVSFILLFMTFSDINVSWT--RPWTIL 473
           S      +SFI+LFMT+  + + W   R W+++
Sbjct: 373 SAVESAMISFIVLFMTWLKLLIPWRLFRLWSLI 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,718
Number of Sequences: 5004
Number of extensions: 66796
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)