Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0371.Seq
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165...    30   2.4  
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171...    30   2.4  
07_03_1257 - 25241194-25242018                                         29   4.2  
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172...    28   7.3  
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177...    28   7.3  
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566...    28   7.3  
03_05_0074 + 20516341-20516444,20517284-20517391,20517500-20517578     28   9.7  
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696...    28   9.7  

>12_01_0220 -
           1657554-1657620,1657943-1658109,1658110-1658267,
           1658362-1658447,1658559-1658808,1659194-1660320,
           1662207-1662351,1663555-1663696,1663775-1663828,
           1663914-1663985,1664710-1664778,1664885-1664926,
           1665024-1665092,1665257-1665394,1665518-1665628,
           1665704-1665836,1666834-1666889,1667191-1667901
          Length = 1198

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 254 LVPAKNPHAPPPVSVKTTGPVWDIGQVLKAARLLCKP 364
           LVP  +P  PPP+S    GP +D  Q+     LL +P
Sbjct: 51  LVPF-SPAQPPPLSNLLAGPAFDAEQIWSQIELLSRP 86


>11_01_0219 -
           1710206-1710246,1710479-1710620,1710699-1710752,
           1710838-1710909,1711631-1711699,1711807-1711848,
           1711946-1712014,1712130-1712267,1712390-1712500,
           1712576-1712726,1713720-1713775,1714076-1714753
          Length = 540

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 254 LVPAKNPHAPPPVSVKTTGPVWDIGQVLKAARLLCKP 364
           LVP  +P  PPP+S    GP +D  Q+     LL +P
Sbjct: 51  LVPF-SPAQPPPLSNLLAGPAFDAEQIWSQIELLSRP 86


>07_03_1257 - 25241194-25242018
          Length = 274

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 539 TPSGIAQTM*RCRCTVGSQPGTQYRPWPGPRHIYIGKRH 423
           TPS  + T  RCR T+ S   T+ RP   PR ++   RH
Sbjct: 62  TPSPASMTPSRCRTTLASTTTTRRRP---PRRLHSRPRH 97


>12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,
            1722327-1722485,1722552-1722662,1722791-1722841,
            1722948-1723192,1723745-1725278
          Length = 1595

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 657  CSPDNV-LHFP*NGLSSALPIVVVARSCS 574
            CSP++V LH+  NGL+S  P V+ +  C+
Sbjct: 1429 CSPNDVTLHYLVNGLTSCTPCVINSICCN 1457


>11_01_0229 -
           1771701-1774164,1774694-1774847,1774980-1775055,
           1775439-1775477,1778516-1778674,1778741-1778851,
           1779014-1779064,1779173-1779256
          Length = 1045

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 657 CSPDNV-LHFP*NGLSSALPIVVVARSCS 574
           CSP++V LH+  NGL+S  P V+ +  C+
Sbjct: 878 CSPNDVTLHYLVNGLTSCTPCVINSICCN 906


>08_02_0980 +
           23255992-23256408,23256480-23256517,23256606-23256654,
           23256787-23256848,23256876-23256938,23256939-23257599
          Length = 429

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 502 RQRHIVWAIPDGVSETSLGGQTKGRARTRYNNYWKGAGQPILR--EMENVVWGTKR 663
           RQRHIV   P G + T  GG +   AR + +   + AG    R     + +WGT+R
Sbjct: 51  RQRHIVAEPPAGDTSTKRGGASVAGAREQSDGGGRLAGAREGRGGGGGSQIWGTER 106


>03_05_0074 + 20516341-20516444,20517284-20517391,20517500-20517578
          Length = 96

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 674 GSWPIGLGIR-IKKNKGSSRLVGTLFCRPTILAV 772
           G WP GLG+  + + KG  R+V  +    T+LA+
Sbjct: 5   GEWPRGLGVGVVGQGKGGGRVVRWIGSGVTVLAI 38


>01_06_0357 -
           28668894-28669238,28669510-28669537,28669578-28669635,
           28669836-28669916,28670395-28670526,28670609-28670926,
           28672495-28673317
          Length = 594

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 598 SCCSAFLLCPWSGLPATSR*LHQE 527
           SCC  +++  W G  AT   LH+E
Sbjct: 538 SCCGTWIIIKWVGYEATGLVLHKE 561


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,230,938
Number of Sequences: 37544
Number of extensions: 465731
Number of successful extensions: 1185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)