Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0371.Seq
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57322| Best HMM Match : DNA_pol_A (HMM E-Value=1.7e-07)             30   1.8  
SB_15001| Best HMM Match : Calx-beta (HMM E-Value=0.023)               30   1.8  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)                  29   4.3  
SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)                 28   9.9  
SB_13133| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   9.9  
SB_53754| Best HMM Match : M-factor (HMM E-Value=5.8)                  28   9.9  
SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023)              28   9.9  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   9.9  

>SB_57322| Best HMM Match : DNA_pol_A (HMM E-Value=1.7e-07)
          Length = 246

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 362 PPQQVDFED-EQEMRFVYSVIYDVFR 436
           PP +VDF++ E+  R VYSVIY V R
Sbjct: 5   PPVKVDFKERERTKRIVYSVIYGVGR 30


>SB_15001| Best HMM Match : Calx-beta (HMM E-Value=0.023)
          Length = 308

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 387 TNKKCVSFILLFMTFSDINVSWTRPWTILSSWLTTHSTPATSHSLGY 527
           T  +  +F+L    FS I+    +  T+++SW    ST  TSH L +
Sbjct: 251 TQGRPYNFLLCRYEFSAISFDVAKSVTVVASWTFVSSTMLTSHCLNF 297


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 380 FEDEQEMRFVYSVIYDVFRYKCVLDQAMDDIEFLADY 490
           F+D+ E R  YS+ +   RY+ VL+  + D  F + +
Sbjct: 109 FDDDLERRRAYSMAFGAKRYELVLEDVLLDSYFFSSF 145


>SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)
          Length = 455

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 607 PSNSCCSAFLLCP-WSGLPATSR*LHQE*PKLC 512
           P+ SCC+A LL P WS L A  R L Q   KLC
Sbjct: 424 PTTSCCTAPLLGPTWSMLLAFGR-LRQASTKLC 455


>SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)
          Length = 349

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 606 LPIVVVARSCSALGLASQRRLANSIRNSPNY--VTLPVY 496
           + ++++  SC +LGL +    ANS+  SP +  VT+ +Y
Sbjct: 289 ISVLLLTLSCGSLGLYAPTGSANSVDLSPRFAGVTMAIY 327


>SB_13133| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 395

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 313 WAGSFNGNRWWCMRILRRHQKL 248
           W G  NG   WC R+ RR + L
Sbjct: 341 WKGRLNGGAAWCARVRRRGEWL 362


>SB_53754| Best HMM Match : M-factor (HMM E-Value=5.8)
          Length = 412

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 535 GVSETSLGGQTKGRARTRYNNYWKGAGQPILREMENVVWGTKRLH 669
           G    + G +T   A TRY N        I RE+  +VWGT++ H
Sbjct: 103 GRKTVAFGSKTLSPAETRYAN--------IERELLAIVWGTEKFH 139


>SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023)
          Length = 384

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 629 GKWRTLSGEQRGYTFGSW 682
           G+WR L+G + G  FG W
Sbjct: 156 GRWRVLTGNETGALFGWW 173


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 313  WAGSFNGNRWWCMRILRRHQKL 248
            W G  NG   WC R+ RR + L
Sbjct: 4997 WKGRLNGGAAWCARVRRRGEWL 5018


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,224,360
Number of Sequences: 59808
Number of extensions: 513355
Number of successful extensions: 1281
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)