Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0371.Seq
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p...    28   6.6  
U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal p...    28   6.6  
AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.      28   6.6  
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    28   8.7  

>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 3   NQKNRFKIFSNYMKK*INKNTRFIKLFLLSVRMHRSHASKNQINNMRPMILEDRTAF 173
           N   RFK F   + +  N+N   +K+ L  +    SH+S+N++      I+   T F
Sbjct: 710 NATTRFKKFEELLSRLPNENRETLKMLLRHLNRVASHSSQNRMQQHNLAIVFGPTLF 766


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -3

Query: 517 LCDV-AGVLWVVSQELNIVHGLVQDTFISENVINNRINETHFL 392
           +C V AG+++++   L +V GLV    +  N++NN+IN++  L
Sbjct: 7   ICQVSAGIIFLIGAAL-LVAGLVIVLNVFPNIVNNQINDSKVL 48


>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
           protein R06F6.8a protein.
          Length = 1468

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 603 PIVVVARSCSALGLASQ-RRLANSIRNSPNYVTLPVY 496
           PIV+ A+ C A+G+ SQ + +A + RN     ++ +Y
Sbjct: 764 PIVISAKDCLAMGVESQLQHVARASRNQGQMESITMY 800


>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
           protein R06F6.8b protein.
          Length = 1470

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 603 PIVVVARSCSALGLASQ-RRLANSIRNSPNYVTLPVY 496
           PIV+ A+ C A+G+ SQ + +A + RN     ++ +Y
Sbjct: 764 PIVISAKDCLAMGVESQLQHVARASRNQGQMESITMY 800


>U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal
           protein 7 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = -2

Query: 704 YESLSRWASCRKCNLFVPQTTF-----SISLKMGCPAP 606
           Y+S  RWA   KC+  + QT F     +IS KM  P P
Sbjct: 75  YKSCDRWAVEDKCHTILTQTNFFDVNCAISCKMCSPDP 112


>AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = -2

Query: 704 YESLSRWASCRKCNLFVPQTTF-----SISLKMGCPAP 606
           Y+S  RWA   KC+  + QT F     +IS KM  P P
Sbjct: 75  YKSCDRWAVEDKCHTILTQTNFFDVNCAISCKMCSPDP 112


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 652 PRQRSPFPLKWVVQRPSNSCCSAF-LLCPWSG 560
           P  R P PL W + R   + C+ F ++  W G
Sbjct: 363 PAMRKPLPLFWSILRSLGALCAVFGVVLAWHG 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,981,421
Number of Sequences: 27780
Number of extensions: 388033
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)