Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0371.Seq
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23750.1 68416.m02986 leucine-rich repeat family protein / pr...    30   2.0  
At2g17520.1 68415.m02026 protein kinase family protein / Ire1 ho...    30   2.0  
At5g37950.1 68418.m04571 hypothetical protein                          29   4.6  
At5g17410.2 68418.m02043 tubulin family protein similar to spind...    28   6.1  
At5g17410.1 68418.m02042 tubulin family protein similar to spind...    28   6.1  

>At3g23750.1 68416.m02986 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 928

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 615 TTHF-KGNGERCLGNKEVTLSAAGPSA*GFVLKKIKAL 725
           TT F K +G RC G +  T+S A  S  GF+  +I  L
Sbjct: 47  TTDFCKWSGVRCTGGRVTTISLADKSLTGFIAPEISTL 84


>At2g17520.1 68415.m02026 protein kinase family protein / Ire1
           homolog-2 (IRE1-2) contains protein kinase domain,
           Pfam:PF00069; identical to Ire1 homolog-2 [Arabidopsis
           thaliana] GI:15277139, cDNA Ire1 homolog-2 GI:15277138
          Length = 841

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 592 NNYWKGAGQP---ILREMENVVWGTKRLHFRQLAHR 690
           NN+WK  G P   +L+ M ++V G   LH   + HR
Sbjct: 534 NNFWKVGGHPSPLMLKLMRDIVCGIVHLHELGIVHR 569


>At5g37950.1 68418.m04571 hypothetical protein
          Length = 351

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 272 PHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRY 439
           P + P   +KT GP+W I ++ K   +  K         +QE   +  VIYD F Y
Sbjct: 40  PESLPASDLKTLGPIWFIIKLNKECEISFKKCLGQFLLQQQEE--IACVIYDEFMY 93


>At5g17410.2 68418.m02043 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 679

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 674 GSWPIGLGIRIKKNKGSSRLVGTLFCR 754
           G+W I  GIR   +KG++ L  +L CR
Sbjct: 504 GAWQIHQGIRSMNSKGTAILRSSLLCR 530


>At5g17410.1 68418.m02042 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 678

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 674 GSWPIGLGIRIKKNKGSSRLVGTLFCR 754
           G+W I  GIR   +KG++ L  +L CR
Sbjct: 503 GAWQIHQGIRSMNSKGTAILRSSLLCR 529


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,052,502
Number of Sequences: 28952
Number of extensions: 366860
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)