Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0369.Seq
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   1.7  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   3.9  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   6.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.8  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   6.8  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    26   6.8  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   9.0  

>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 169 LFVLQAVEYFPGXVLLQQRLRVGSLELAETSLQFLEG--CGVDHC 41
           LFV+  VEY PG  L    LR GS    +T+ +FL    CG+++C
Sbjct: 83  LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 653 PTGRGILPTNENKNVPRVVQTKEEQPSGIQS 745
           P  + I    E+ N+  +VQT E+ P GIQS
Sbjct: 178 PGSKPISEDLEDLNLQSIVQTFEDLPEGIQS 208


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 292 IIEDYHNGFKKTDKHPPKNW 351
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 159 RTKRPHSDPPSLTASNRVSRTWTP 230
           R  RP  +PP L+ASN    T  P
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPP 414


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -2

Query: 174 EVFLFFRLSNTSLVXYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFLAL 22
           E + F RL  T    +F S + E      L  AS  S+VAA  I AAF+ L
Sbjct: 518 EKYDFNRLLAT-FAMHFSSEEDEIQQTKKLNRASVISKVAALIITAAFIIL 567


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 620 KRSPSLNRKWSSMSCCWVSFEHAGEGVERALELALEADRVP 498
           KR   L R++S   CC ++     EGV+ A  +  +A + P
Sbjct: 430 KRKSRLVRQYSLAWCCLINAIRRTEGVKAARAIFTKARKAP 470


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 373 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 495
           N+D A EF++ T      S++G   N C+ +  YK   DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,118
Number of Sequences: 5004
Number of extensions: 51993
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)