Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0369.Seq
(766 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65580.1 68418.m08251 expressed protein 30 1.9
At5g13540.1 68418.m01563 expressed protein HERC2 - Homo sapiens,... 30 1.9
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 30 1.9
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 30 1.9
At1g18420.1 68414.m02300 expressed protein contains Pfam profile... 30 1.9
At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,... 29 2.6
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ... 29 4.5
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ... 29 4.5
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 28 5.9
>At5g65580.1 68418.m08251 expressed protein
Length = 102
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3
Query: 474 QGDGGQGLRHPVSLEGELKGTFYPLTGMFE 563
Q DGG G R L GE+KG +PLT M E
Sbjct: 68 QTDGGDGERER-RLRGEVKGFSFPLTTMVE 96
>At5g13540.1 68418.m01563 expressed protein HERC2 - Homo sapiens,
EMBL:AF071172; isoform contains non-consensus GG
acceptor splice site at intron 6
Length = 558
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 489 QGLRHPVSLEGELKGTFYPLTGMFEGDPAAAHRRPL-PVQGGRPLSCR 629
+G+ V +GE++ F+ L G++ GDPA P+ V RP+ +
Sbjct: 500 RGIITTVHADGEVRVAFFGLPGLWRGDPADLEVEPMFEVGEWRPMQVK 547
>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +3
Query: 30 EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTXPGKYSTA*RTKRPHSDPPSLTA 200
E ++ +P P++N R S S PT+S +S + +A R KRP S PPS T+
Sbjct: 31 EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQSVAAKRAVSAER-KRP-STPPSPTS 85
>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +3
Query: 30 EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTXPGKYSTA*RTKRPHSDPPSLTA 200
E ++ +P P++N R S S PT+S +S + +A R KRP S PPS T+
Sbjct: 31 EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQSVAAKRAVSAER-KRP-STPPSPTS 85
>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 581
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 307 HNGFKKTDKHPPKNWGDVDTLGNLDPA 387
H + PPKNW DV T NL A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496
>At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,
EMBL:AF071172; isoform contains non-consensus GG
acceptor splice site at intron 6
Length = 788
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 489 QGLRHPVSLEGELKGTFYPLTGMFEGDPAAAHRRPL 596
+G+ V +GE++ F+ L G++ GDPA P+
Sbjct: 496 RGIITTVHADGEVRVAFFGLPGLWRGDPADLEVEPM 531
>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 11 DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 124
DGC SA A D +E E G + KL+ S+ SLL+
Sbjct: 96 DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134
>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 11 DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 124
DGC SA A D +E E G + KL+ S+ SLL+
Sbjct: 96 DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 337 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMED 489
PP +G D++TL + AG++V + + G+ EG+ F P + Y E+
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAEN 699
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,342,141
Number of Sequences: 28952
Number of extensions: 300632
Number of successful extensions: 1045
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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