Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0367.Seq
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   0.72 
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    29   0.95 
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.2  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   2.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 624 SNLVTETRASRXSGERGRNWIXDKFWHRGGNRFVRWNPGAMG 749
           S L T+ R    +    RNW    +W + GN F    P  +G
Sbjct: 28  SELNTQNRIPYNTSANNRNWQIPLYWQQRGNEFQASPPPPLG 69


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 361 STLIFKCSHNKISNTSLITFW 299
           ST IF CS +KI N  L+ FW
Sbjct: 512 STFIFLCSLSKILNGPLVPFW 532


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 352 IFKCSHNKISNTSLITFWSLKFSKIMAKH 266
           I K SH+KIS + LIT   + +S++  K+
Sbjct: 18  ISKISHSKISISELITLLDIHYSELFTKN 46


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 559 SQMTVINSSVSR--LLRTPVCERQRRGQESQSCRNSCQ 452
           SQ++ ++ S SR  L+ TP   R  + + S SCRNS Q
Sbjct: 200 SQLSSLHPSSSRRHLISTPHVNRGTQFKRSSSCRNSRQ 237


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +2

Query: 449 LLTTVSAAL*FLTSPLSFTDRSTKKTRH*RIDYRHLAEHLNSSCT 583
           LL T S  +  LT  L   D S  + RH R+   HLA HL+++CT
Sbjct: 344 LLATNSNGMLLLTWLL---DNSFFRNRH-RLLAIHLATHLHTTCT 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,293
Number of Sequences: 5004
Number of extensions: 49768
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)