Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0366.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57461| Best HMM Match : Pkinase (HMM E-Value=1.1e-34)              169   2e-42
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)              156   2e-38
SB_18577| Best HMM Match : No HMM Matches (HMM E-Value=.)             109   2e-24
SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08)              105   5e-23
SB_59594| Best HMM Match : zf-C3HC4 (HMM E-Value=0.21)                 30   2.3  
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)              30   2.3  
SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_29640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_19516| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_32378| Best HMM Match : DUF591 (HMM E-Value=1.6)                    28   9.2  
SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)             28   9.2  
SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)               28   9.2  
SB_12630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_57461| Best HMM Match : Pkinase (HMM E-Value=1.1e-34)
          Length = 355

 Score =  169 bits (412), Expect = 2e-42
 Identities = 84/136 (61%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
 Frame = +2

Query: 260 GEEVAVKVESTKARHPQLLYESRVYXMLQGGVGIPHIRWYGYEREYNILVMDLLGPSLEX 439
           GEEVAVK+ES KARHPQLLYES++Y +LQGGVGIP +R+YG ER+YN+LVM+LLGPSLE 
Sbjct: 42  GEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPSVRYYGQERDYNVLVMELLGPSLED 101

Query: 440 LFNFCTRQFTIKTVLMLADQMAERVEFLH-WQVLHSPRHSXRTTS*WASAGHFXXLYMID 616
           LFNFC+R+FT+KTVLMLADQM  R+E++H    +H  R             H   L++ID
Sbjct: 102 LFNFCSRRFTMKTVLMLADQMISRIEYVHNKNFIH--RDIKPDNFLMGVGKHCNKLFLID 159

Query: 617 FGLAKKYXGLRTRAXI 664
           FGLAKKY   RTR  I
Sbjct: 160 FGLAKKYRDSRTRQHI 175



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 24/49 (48%), Positives = 30/49 (61%)
 Frame = +3

Query: 162 SRSEVLISGKYKVSKKIGGGSFGDIYLAINIELARRWQ*KLNLQRPDTP 308
           +RSE  + GKY++ +KIG GSFGDIYLAIN         KL  Q+   P
Sbjct: 9   NRSEFEVGGKYRLVRKIGSGSFGDIYLAINTTNGEEVAVKLESQKARHP 57


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score =  156 bits (378), Expect = 2e-38
 Identities = 83/147 (56%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
 Frame = +2

Query: 260 GEEVAVKVESTKARHPQLLYESRVYXMLQGGVGIPHIRWYGYEREYNILVMDLLGPSLEX 439
           GEE AVK+ES KARHPQLLYES++Y +L GG GIP IR +  E +YN+LVMDLLGPSLE 
Sbjct: 37  GEEKAVKLESQKARHPQLLYESKLYKILAGGSGIPAIRHFSQENDYNVLVMDLLGPSLED 96

Query: 440 LFNFCTRQFTIKTVLMLADQMAERVEFLH-WQVLHSPRHSXRTTS*WASAGHFXXLYMID 616
           LFNFC R+F +KTVLMLADQM  R+E++H    +H  R             H   LY+ID
Sbjct: 97  LFNFCNRKFNMKTVLMLADQMIARIEYVHNKNFIH--RDIKPDNFLMGIGRHCNKLYLID 154

Query: 617 FGLAKKYXGLRTRAXISLXRRPEIFTG 697
           FGLAKKY   RT+  IS  R  +  TG
Sbjct: 155 FGLAKKYRDSRTKQHIS-YREDKNLTG 180



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +3

Query: 165 RSEVLISGKYKVSKKIGGGSFGDIYLAINIELARRWQ*KLNLQRPDTP 308
           +SE ++ GKY++ +KIG GSFGDIYL ++ E       KL  Q+   P
Sbjct: 5   KSEFIVQGKYRLVRKIGSGSFGDIYLCVHTENGEEKAVKLESQKARHP 52


>SB_18577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score =  109 bits (262), Expect = 2e-24
 Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
 Frame = +2

Query: 263 EEVAVKVESTKARHPQLLYESRVYXMLQGGVGIPHIRWYGYEREYNILVMDLLGPSLEXL 442
           E VA+K+E  K+R PQL  E R Y  L    GIP + ++G   +YN LVM+LLGPSLE L
Sbjct: 70  EHVAIKLEPMKSRAPQLHLEYRFYKALGNAEGIPQVHYFGPCGKYNALVMELLGPSLEDL 129

Query: 443 FNFCTRQFTIKTVLMLADQMAERVEFLHWQ-VLHSPRHSXRTTS*WASAGHFXXLYMIDF 619
           F+ C RQF++KTVLM+A Q+  R+E++H + +++             SAG    + +IDF
Sbjct: 130 FDLCNRQFSLKTVLMVALQLISRIEYVHSKNMIYRDIKPENFLIGRKSAGKEKTINIIDF 189

Query: 620 GLAKKYXGLRTRAXI 664
           GLAK+Y    T+  I
Sbjct: 190 GLAKEYIDPETKKHI 204



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 174 VLISGKYKVSKKIGGGSFGDIYLAINI 254
           +++   ++V KKIG G+FG++ L  N+
Sbjct: 40  MMVGPNFRVGKKIGCGNFGELRLGKNL 66


>SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08)
          Length = 335

 Score =  105 bits (251), Expect = 5e-23
 Identities = 54/105 (51%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
 Frame = +2

Query: 353 VGIPHIRWYGYEREYNILVMDLLGPSLEXLFNFCTRQFTIKTVLMLADQMAERVEFLHWQ 532
           VGIP I+W G E +YN+LVM+LLGPSLE LFNFC R+F+IKTVL+LADQ   R+E++H +
Sbjct: 26  VGIPTIKWCGTEGDYNVLVMELLGPSLEDLFNFCNRKFSIKTVLLLADQTISRIEYVHSK 85

Query: 533 -VLHSPRHSXRTTS*WASAGHFXXLYMIDFGLAKKYXGLRTRAXI 664
             +H               G+   +Y+IDFGLAKKY   RT   I
Sbjct: 86  NFIHRDIKPDNFLMGLGKKGNL--VYIIDFGLAKKYRDPRTHQHI 128



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +3

Query: 171 EVLISGKYKVSKKIGGGSFGDIYL 242
           E+ +  KY++ +KIG GSFGDIYL
Sbjct: 2   ELRVGNKYRLGRKIGSGSFGDIYL 25


>SB_59594| Best HMM Match : zf-C3HC4 (HMM E-Value=0.21)
          Length = 235

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 123 TNAQSQNYDNEITNYAQSEWKQR*NSKLHFTRQ 25
           T+  S  Y+NEIT Y +  W+   N++ H+ R+
Sbjct: 176 TSTLSHQYNNEITKYGEWLWEIDANNEYHWLRE 208


>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
          Length = 479

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 123 TNAQSQNYDNEITNYAQSEWKQR*NSKLHFTRQ 25
           T+  S  Y+NEIT Y +  W+   N++ H+ R+
Sbjct: 116 TSTLSHQYNNEITKYGEWLWEIDANNEYHWLRE 148


>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 236 IFGYQHRTGEEVAVKVESTKARHPQLLYESR--VYXMLQGGVGIPHIRWYGYEREYNILV 409
           IF    R G  + V  E+ +  H       R   + +++     PH  W+G E+EY +L 
Sbjct: 85  IFKDPFRGGNNILVLCETYQFDHKPTRTNKRKTCFDVMESEKVKPHRPWFGIEQEYTLLD 144

Query: 410 MD 415
           +D
Sbjct: 145 ID 146


>SB_29640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 251 HRTGEEVAVKVESTKAR-HPQLLYESRVYXMLQ 346
           H+TG+ VAVK+   K R H Q L E ++   L+
Sbjct: 307 HKTGQHVAVKIIRNKKRFHQQALVEVKILDNLR 339


>SB_19516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 235 ISPNDPPPIFFDTLYFPEINTSXRDLHGNDIFTY 134
           + P DPP     TL   ++++   D+HGND+  +
Sbjct: 208 LEPTDPPTTV-TTLKMRKVSSVLADVHGNDVIAF 240


>SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 120 NAQSQNYDNEITNYAQSEWKQ 58
           N+++++YD++  N   SEWKQ
Sbjct: 398 NSKTKSYDSDFVNPTDSEWKQ 418


>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1226

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 141  KMSFPWRSRSEVLISGKYKVSKKIGGGSFGDIYLAINIELARRWQ*KLNLQRPDTPNFSM 320
            K+S+ + S + V +S +   S K    S+  IY    +   R+WQ +L    PD+    +
Sbjct: 974  KLSYKYISSTSVDVSWESPKSYKGKADSYEMIYTTNQLASERKWQKRLLSLSPDSKELVV 1033

Query: 321  RAECIXCSK 347
            R   +  +K
Sbjct: 1034 RLTGLTSNK 1042


>SB_32378| Best HMM Match : DUF591 (HMM E-Value=1.6)
          Length = 457

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 374 WYGYEREYNILVMDLLGPSLEXLFNFCTRQFTIKTV 481
           WY +ERE+ I  +  L P    L    T +  +KT+
Sbjct: 212 WYNFEREHQITTIASLPPIATLLAGHHTAESIVKTI 247


>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
          Length = 773

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 195 KVSKKIGGGSFGDIY 239
           K+ K IGGG FGD+Y
Sbjct: 475 KLEKVIGGGEFGDVY 489


>SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)
          Length = 501

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 159 RSRSEVLISGKYKVSKKIGGGSFGDIYLAINIELARRW 272
           R   E  I   Y+  + +G GSFG +  A +IE   RW
Sbjct: 16  RIEDEKQIEDVYEFGQVLGRGSFGVVNEAKHIETGTRW 53


>SB_12630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +1

Query: 403  PGHGPAGPLARGSLQLLHPPVHDKNRSNACRSNG*TRRVPPLASASFXAXFXPDNFLMGI 582
            PGH    P  R +L L    + +++   A R +  T+R+PPLA       F  D +++ +
Sbjct: 820  PGHYIPHPTWRDTLALREEALRNRHMRAAERWSQHTKRLPPLAIGHHVRQF--DQYVVRV 877

Query: 583  GRALXXAVHDRLWTREEI 636
              +    + +R + R+ I
Sbjct: 878  DGSGRITLRNRKFLRKYI 895


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,145,191
Number of Sequences: 59808
Number of extensions: 467831
Number of successful extensions: 1032
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)