Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0364.Seq
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    29   0.56 
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    28   1.7  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   3.0  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   3.0  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   4.0  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   5.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.2  

>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 256 ETRVLSLTRXLDDAAEKIEELERTKRVLQAEWDEL 360
           E RV SL R  DD  +K+EE+      ++AE DE+
Sbjct: 120 ERRVQSLERERDDMEQKLEEMTDKYTKVKAELDEV 154


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 11  DVEALHRQIDELQ-QANDKLDKSKKXLQAELEDTNIELEAQR 133
           D E LH+ +DE++   N+KL+  K   Q + E  +  L+ +R
Sbjct: 59  DSELLHKNLDEIKFLQNEKLNNEKLLEQEQNEANDYRLKVER 100


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/37 (27%), Positives = 25/37 (67%)
 Frame = +2

Query: 14  VEALHRQIDELQQANDKLDKSKKXLQAELEDTNIELE 124
           +E +H+ I++ Q++ D  +++++ L++E+     ELE
Sbjct: 840 LERMHKFIEKDQESIDNYEQNREALESEVATAEAELE 876


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 260 VSSXWPRAPPDLSRRRTAPPRHALRPPPY 174
           + S +   PP L RR+ + P  A+  PPY
Sbjct: 204 LESAYEERPPSLPRRKPSRPGTAITLPPY 232


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 295 AAEKIEELERTKRVLQAEWDELANSQ 372
           A EKI +L   K++LQ E D L N +
Sbjct: 526 ALEKINQLTSEKQILQVELDMLLNKE 551


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 159 NRRASIRWWPKSVPWRSGTPPREIRRSTRPXRGDQGALSD 278
           N+  S+ W      +R      ++R  T P + D+G LSD
Sbjct: 166 NKHISVGWGRSETQFRGKRVRAKLRDPTLPEKIDEGKLSD 205


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 287 NXLVRESTLVSSXWPRAPPDLSRRRT 210
           N ++RE  ++S   PR  P LSRR +
Sbjct: 777 NAIIREPGILSPLSPRVQPVLSRRES 802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,021
Number of Sequences: 5004
Number of extensions: 28275
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)