Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0363.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    28   9.2  
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_5256| Best HMM Match : EGF_2 (HMM E-Value=5.1)                      28   9.2  

>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 343 DKVMKGRTLT*VTNKDNREDEVDEVRAGARGRYGVNEVREGEIGRNGELVEFXK 504
           D  +KG TL   T+ DN +D    +     GR G +  +   I + G LV+  K
Sbjct: 702 DANLKGTTLASTTDSDNLQDRFGTISTEI-GRNGADMGKAANILKEGMLVDISK 754


>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 88  LHYNYIADSFNTFTPLYNFYLYISYKT 8
           +H++Y+   F+ F   ++ Y YI Y+T
Sbjct: 78  MHHSYVMKYFHLFARHFDLYKYIRYRT 104


>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 82  YNYIADSFNTFTPLYNFYL 26
           YNY  D +N +  +YN+YL
Sbjct: 546 YNYYLDVYNYYLDIYNYYL 564



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 82  YNYIADSFNTFTPLYNFYLYISYK 11
           YNY  D +N +  +YN+YL +  K
Sbjct: 588 YNYYLDVYNYYLDVYNYYLDVYNK 611


>SB_5256| Best HMM Match : EGF_2 (HMM E-Value=5.1)
          Length = 122

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 82 YNYIADSFNTFTPLYNFYL 26
          YNY  D +N +  +YN+YL
Sbjct: 9  YNYYLDVYNYYLDIYNYYL 27



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 82  YNYIADSFNTFTPLYNFYLYISYK 11
           YNY  D +N +  +YN+YL +  K
Sbjct: 72  YNYYLDVYNYYLDVYNYYLDVYNK 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,376,967
Number of Sequences: 59808
Number of extensions: 259594
Number of successful extensions: 405
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)