Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0360.Seq
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13980.1 68416.m01765 expressed protein 34 0.12
At3g01085.1 68416.m00012 protein kinase family protein contains ... 32 0.35
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 31 1.1
At4g15030.1 68417.m02309 expressed protein 30 1.9
At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)... 29 2.5
At3g17170.1 68416.m02190 ribosomal protein S6 family protein (RF... 29 3.3
At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21) ... 29 4.3
At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21) ... 29 4.3
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 29 4.3
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 29 4.3
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 29 4.3
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 29 4.3
At1g03470.1 68414.m00328 kinase interacting family protein simil... 29 4.3
At5g41020.1 68418.m04986 myb family transcription factor contain... 28 5.7
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti... 28 5.7
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 28 5.7
At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family pro... 28 5.7
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 28 5.7
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 28 5.7
At1g45207.2 68414.m05186 remorin family protein Since this genom... 28 5.7
At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 fam... 28 5.7
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re... 28 7.6
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 28 7.6
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 27 10.0
At3g10550.1 68416.m01266 expressed protein 27 10.0
At2g38440.1 68415.m04721 expressed protein 27 10.0
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo... 27 10.0
At2g02440.1 68415.m00183 hypothetical protein 27 10.0
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 27 10.0
>At3g13980.1 68416.m01765 expressed protein
Length = 357
Score = 33.9 bits (74), Expect = 0.12
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 6/141 (4%)
Frame = +2
Query: 326 HRETQARHHQEVIINYKKTQFLPRSDYSNPSRTRD*ARYSNTDTS-TSGIDD-RSRGRKN 499
H++ A H++ I+ + +D+ R D R+SN+ +S +SG S
Sbjct: 50 HQQRNASLHEDREISPIYHRRSIAADFERSRRKTDFLRHSNSSSSDSSGFSSSESDSFHG 109
Query: 500 RSCKENDDDSITEEMPEPRTSDDPKGSTKWFDDEEAGGLPRSESRGVQSFTEL--LRQLF 673
RS S + + P+P + S+ +E GG R++S+ ++ +++L ++Q
Sbjct: 110 RSKSSASPPSSSRQQPKPIRTSSVDHSSAVQKPKELGGFLRTKSKALKIYSDLKKVKQPI 169
Query: 674 CCGG--PDYGPPLLSNAGLQP 730
GG + L +NA P
Sbjct: 170 SPGGRLATFLNSLFTNAATNP 190
>At3g01085.1 68416.m00012 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; contains
non-consensus splice site (GC) at intron 2
Length = 629
Score = 32.3 bits (70), Expect = 0.35
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 294 RDRKENERAVSTEKHKHGITKKLSSITKKRSSSPEVITLTQVGLETKQDTVTPIPVQVAS 473
R+ + R VS +K + TKKL + P + ETK++ T I VQ S
Sbjct: 426 REELQRRRRVSIKKRDNLATKKLGKSRRATVKEPTNLNRLPTHQETKKEAETEIVVQTPS 485
Query: 474 TTDLVAEKIE 503
T + E
Sbjct: 486 ETSQATTRSE 495
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this gene;
contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = +3
Query: 39 HIDTTVCFLYLSTLMDA*GLNNVRERKHRRVWRLTGRCRRVSQTQDIST*IARVAHRITS 218
H+ + Y+S+ D G NV RKHRR R+ Q D AHR+ S
Sbjct: 1044 HLSVSDLLDYISSDPDTKG--NVAHRKHRRA--------RILQVNDKVASADDDAHRVAS 1093
Query: 219 QTIQSTWRTACQEDLKEATENLDE 290
Q TW + D+ ++ +++
Sbjct: 1094 QIDIVTWNNVAEADVTKSRSEVND 1117
>At4g15030.1 68417.m02309 expressed protein
Length = 179
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 246 ACQEDLKEATENLDEIRDRKENERAVSTEKHK 341
AC+ + ++ DE RKE ER+ S EK K
Sbjct: 94 ACERSKSHSEDDTDEEEKRKEGERSESNEKKK 125
>At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 349
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +2
Query: 389 LPRSDYSNPSRTRD*ARYSNTDTSTSGIDDRSRGRKNRSCKENDDDSITEEMPEPRTSDD 568
+PRS SNP + + S D +DD SR ++ ++ K++ + +++ E SD
Sbjct: 213 VPRSTNSNPGTSDSGCKSSQCDEGE--LDDPSRSKRRKNEKQSSEAGVSQGSVE---SDS 267
Query: 569 PKGSTKW--FDDEEAGG--LPRSESR 634
+ +W + + GG PRS R
Sbjct: 268 LEDGFRWRKYGQKVVGGNAYPRSYYR 293
>At3g17170.1 68416.m02190 ribosomal protein S6 family protein (RFC3)
annotation temporarily based on supporting cDNA
gi|15620809|dbj|AB057424.1|; contains TIGRfam TIGR00166
and Pfam PF01250 profiles ribosomal protein S6.
Length = 314
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 521 DDSITEEMPEPRTSDDPKGSTKWFDDEEAGGLPRSESRG 637
D++ITE+ P P + +++DD+E + E G
Sbjct: 212 DEAITEDCPPPPEFHSVRAGDEYYDDDEEEEIEEDEDEG 250
>At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 267 EATENLDEIRDRKENERAVSTEKHKHGITKKLSSITKKRSSSPEVITLTQVGLETKQDTV 446
E ++L + DR + A + EK G+ L+ TK++ S VI + L+ ++ +
Sbjct: 155 EDIKDLKPLNDRVFIKVAEAEEKTAGGLL--LTETTKEKPSIGTVIAVGPGSLD-EEGKI 211
Query: 447 TPIPVQVAST 476
TP+PV ST
Sbjct: 212 TPLPVSTGST 221
>At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 267 EATENLDEIRDRKENERAVSTEKHKHGITKKLSSITKKRSSSPEVITLTQVGLETKQDTV 446
E ++L + DR + A + EK G+ L+ TK++ S VI + L+ ++ +
Sbjct: 155 EDIKDLKPLNDRVFIKVAEAEEKTAGGLL--LTETTKEKPSIGTVIAVGPGSLD-EEGKI 211
Query: 447 TPIPVQVAST 476
TP+PV ST
Sbjct: 212 TPLPVSTGST 221
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 386 FLPRSDYSNPSRTRD*ARYSNTDTSTSGIDDRSRGRKNRSCKENDDDSITEEMPEPRTSD 565
FL + DY +P ++D + + S + D +N+ K D+D +E+PEP +
Sbjct: 414 FLDQIDYKDPI-SKDTTDLAVSKDDNSVLKDAPEEAENK--KRVDEDETMKEVPEPEDGN 470
Query: 566 DPKGS 580
+ K S
Sbjct: 471 EEKVS 475
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 386 FLPRSDYSNPSRTRD*ARYSNTDTSTSGIDDRSRGRKNRSCKENDDDSITEEMPEPRTSD 565
FL + DY +P ++D + + S + D +N+ K D+D +E+PEP +
Sbjct: 414 FLDQIDYKDPI-SKDTTDLAVSKDDNSVLKDAPEEAENK--KRVDEDETMKEVPEPEDGN 470
Query: 566 DPKGS 580
+ K S
Sbjct: 471 EEKVS 475
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 386 FLPRSDYSNPSRTRD*ARYSNTDTSTSGIDDRSRGRKNRSCKENDDDSITEEMPEPRTSD 565
FL + DY +P ++D + + S + D +N+ K D+D +E+PEP +
Sbjct: 414 FLDQIDYKDPI-SKDTTDLAVSKDDNSVLKDAPEEAENK--KRVDEDETMKEVPEPEDGN 470
Query: 566 DPKGS 580
+ K S
Sbjct: 471 EEKVS 475
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 386 FLPRSDYSNPSRTRD*ARYSNTDTSTSGIDDRSRGRKNRSCKENDDDSITEEMPEPRTSD 565
FL + DY +P ++D + + S + D +N+ K D+D +E+PEP +
Sbjct: 414 FLDQIDYKDPI-SKDTTDLAVSKDDNSVLKDAPEEAENK--KRVDEDETMKEVPEPEDGN 470
Query: 566 DPKGS 580
+ K S
Sbjct: 471 EEKVS 475
>At1g03470.1 68414.m00328 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 269
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 467 GIDDRSRGRKNRSCKENDDDSITEEMPEPRTSDDPKGSTKWFDDEEAGGL 616
G D S K+ +C E+ E E S+ G +KW D+ E G+
Sbjct: 92 GSDSESH-EKSSTCDESSWSEACETHEEYAESEIDNGESKWVDESEIDGI 140
>At5g41020.1 68418.m04986 myb family transcription factor contains
Pfam profile: PF00249 Myb DNA binding domain
Length = 588
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 446 NTDTSTSGIDDRSRGRKNRSCKENDDDSITEEMPEPRTSDDPKGSTK 586
++D +D + G+K R K+ +DS TEE T D K K
Sbjct: 196 DSDVEDINLDSTNDGKKKRKKKKQSEDSETEENGLNSTKDAKKRRKK 242
>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein contains Pfam profile
PF02493: MORN repeat
Length = 871
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 261 LKEATENLDEIRDRKENERAVSTEKHKHGITKKLSSITKKRSSSPEVITLTQVGLETKQD 440
L+EA E++DE +KE E TE G+T++ + +V+T + E KQ+
Sbjct: 622 LEEAIEDMDEELKKKEQEEEKKTEM---GLTEEDEDVLVPVYKEEKVVTAKEKIQENKQE 678
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +2
Query: 419 RTRD*ARYSNTDTSTSGIDDRSRGRKNRSCKENDDDSITEEMPEPRTSDDPKGSTKWFDD 598
R R R + D DR+R ++ S K ++DD T + E D +G + D+
Sbjct: 104 RNRHKDRENERDNEKEKDKDRARVKERASKKSHEDDDETHKAAERYEHSDNRGLNEGGDN 163
Query: 599 EEAGGLPRSES 631
+A + S
Sbjct: 164 VDAASSGKEAS 174
>At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family
protein contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 362
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 530 CYHRHSLYSFDF-FGHEIGRRCHLYWYRCYCILLSLESD 417
CY H+LY FD F E + ++Y Y + LS D
Sbjct: 170 CYQNHNLYFFDLKFPKEYPYQAPSFYYHPYDLRLSTPED 208
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 437 RYS-NTDTSTSGIDDRSRGRKNRSCKENDDDSITEEMPE 550
+YS NT+ I + + K + K +DDD TE +PE
Sbjct: 50 KYSINTEEEKVVITGKKKSNKKVTQKHDDDDDFTEAVPE 88
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 362 IINYKKTQFLPRSDYSNPSRTRD*ARYSNTDTSTSGIDDRSRGRKNRSCKENDDDS 529
I+ + Q + D +++R+ R N + RG++ +S KE DDS
Sbjct: 473 IVGFTPVQGITFEDIKYKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDS 528
>At1g45207.2 68414.m05186 remorin family protein Since this genomic
sequence region is unfinished, the annotated gene may be
missing a stop codon or start codon
Length = 555
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 282 LDEIRDRKENERAVSTE-KHKHGITKKLSSITKKRSSSPEVITLTQVGLETKQDTVTPIP 458
L E ++R+ A++ + ++ ++ LS++T S+SP V+ + + + T + +V P P
Sbjct: 131 LRECQERRSRSEALAKKLDYQRTVSLDLSNVT---STSPRVVNVKRASVSTNKSSVFPSP 187
>At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 750
Score = 28.3 bits (60), Expect = 5.7
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 12/137 (8%)
Frame = +3
Query: 222 TIQSTWRTACQEDLKEATENLDEIRDRKENERAVSTEKHKH------GITKKLSSITKK- 380
TI++ + + QE+LK ENL +I +R +N K +H T +S I KK
Sbjct: 225 TIKNVLKLSNQEELKFTRENLKKIEERLKNVFIEFYRKLRHLKNYSFLNTLAISKIMKKY 284
Query: 381 -----RSSSPEVITLTQVGLETKQDTVTPIPVQVASTTDLVAEKIEAVKRMTMIALPKKC 545
RS++ + + T D + + ++V ST + K M ++ PK
Sbjct: 285 DKIASRSAAKPYMEMVDKSYLTSSDEINKLMLRVESTFVEHFAGLNRSKGMNLLR-PKVK 343
Query: 546 RNLGRLMIPKGLRNGLT 596
+ R+ G G T
Sbjct: 344 KEKHRITFSTGFFVGCT 360
>At3g27550.1 68416.m03443 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 491
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/74 (28%), Positives = 28/74 (37%)
Frame = +2
Query: 479 RSRGRKNRSCKENDDDSITEEMPEPRTSDDPKGSTKWFDDEEAGGLPRSESRGVQSFTEL 658
RS G + + ND D+ ++ P DD G DDE R+ S T
Sbjct: 335 RSYGDASHGFRRNDRDTHSQRRPNDSDDDDDDGELDSEDDEIPKRFDRARSSNTN--TRR 392
Query: 659 LRQLFCCGGPDYGP 700
R+ F PD P
Sbjct: 393 PREDFKRRSPDPRP 406
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 362 IINYKKTQFLPRSDYSNPSRTRD*ARYSNTDTSTSGIDDRSRGRKNRSCKENDDDS 529
I+ + Q + D +++R+ R N + RG++ +S KE DDS
Sbjct: 380 IVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDS 435
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 449 TDTSTSGIDDRSRGRKNRSCK-ENDDDSITEEMPEPRTSDDPKGSTKWFDDEEAGG 613
T STS D R K + CK N+++SI E + S P AGG
Sbjct: 222 TPGSTSDKDTLQRPEKTKRCKRNNNNNSIEESSHSSKCSSSPSVRDHSSSSSVAGG 277
>At3g10550.1 68416.m01266 expressed protein
Length = 634
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 452 DTSTSGIDDRSRGRKNRSCKENDDDSITEEMPEPRTSDDPKG 577
D S +++ R R+NR +D MPE TS +PKG
Sbjct: 541 DDPRSSLENNPR-RRNRHGNNSDVSVSISLMPEENTSGNPKG 581
>At2g38440.1 68415.m04721 expressed protein
Length = 1399
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 392 PRSDYSNPSRTRD*ARYSNTDTSTSGIDDRSRGRKNRSC 508
P S+ S + YS +DT++ IDD+S G K C
Sbjct: 440 PVSENGRSSFGKKSTSYSYSDTASISIDDQSDGEKLSGC 478
>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985];
T20K24.13 has been merged with T20K24.12 per suggestion
of Dr. Kristian Axelsen (axe@biobase.dk)
Length = 1172
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +3
Query: 141 TGRCRRVSQTQDIST*IARVAHRITSQTIQSTWRTACQEDLKEATENLDE 290
+G C + Q +DI + + H +T I+ + C+ ++ E + E
Sbjct: 867 SGHCEKKKQAEDIVVPVQIIGHALTHVEIELQTKETCKTSCCDSKEKVKE 916
>At2g02440.1 68415.m00183 hypothetical protein
Length = 138
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 203 GDSGNSGRYVLCLADSTTTTGEPPDPPVFSFSDIIQTSSIHK 78
GD G+S Y+L ST TT + PD + ++ HK
Sbjct: 96 GDGGDSENYMLTEDQSTKTTDKKPDTEALMAENQSTKTTDHK 137
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 27.5 bits (58), Expect = 10.0
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 195 RVAHRITSQTIQSTWRTACQEDLKEATEN-LDEIRDRKEN-------ERAVSTEKHKHGI 350
R A+ + + S + + QE LK+ + LDE+RD E+ E+ TE +
Sbjct: 208 RRANALEKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRY 267
Query: 351 TKKLSSITKKRSSSPE 398
K+L + KKR+ +
Sbjct: 268 KKELYDLVKKRTQDED 283
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,949,523
Number of Sequences: 28952
Number of extensions: 338701
Number of successful extensions: 1352
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -