Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0359.Seq
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56792 Cluster: PREDICTED: similar to CCR4-NOT t...    87   3e-16
UniRef50_Q16NB2 Cluster: Putative uncharacterized protein; n=2; ...    87   5e-16
UniRef50_Q94547 Cluster: Regulator of gene activity; n=3; Sophop...    75   2e-12
UniRef50_Q5TT44 Cluster: ENSANGP00000026958; n=2; Culicidae|Rep:...    71   2e-11
UniRef50_Q9NZN8 Cluster: CCR4-NOT transcription complex subunit ...    48   3e-04
UniRef50_Q4TC75 Cluster: Chromosome undetermined SCAF7048, whole...    46   9e-04
UniRef50_UPI0000E45BD8 Cluster: PREDICTED: hypothetical protein ...    36   0.96 

>UniRef50_UPI0000D56792 Cluster: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 2 isoform b; n=2;
           Endopterygota|Rep: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 2 isoform b - Tribolium
           castaneum
          Length = 483

 Score = 87.4 bits (207), Expect = 3e-16
 Identities = 44/61 (72%), Positives = 47/61 (77%)
 Frame = +3

Query: 255 TSTPPLLDLSEFPSLTARGAGDQXXXXXXXXXGSKPYVGMVKQPTSEQSEFTMSSEDFPA 434
           T+TP LLDLSEFPSLT R +GD          G+KPYVGMVKQPTSE SEFTMSSEDFPA
Sbjct: 76  TNTPSLLDLSEFPSLTNRSSGDNVPQPSPMP-GAKPYVGMVKQPTSEASEFTMSSEDFPA 134

Query: 435 L 437
           L
Sbjct: 135 L 135


>UniRef50_Q16NB2 Cluster: Putative uncharacterized protein; n=2;
           Endopterygota|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 513

 Score = 86.6 bits (205), Expect = 5e-16
 Identities = 48/65 (73%), Positives = 49/65 (75%), Gaps = 4/65 (6%)
 Frame = +3

Query: 255 TSTPPLLDLSEFPSLT-ARGA-GDQXXXXXXXXX--GSKPYVGMVKQPTSEQSEFTMSSE 422
           T TPPLLDLSEFPSLT ARG   DQ           GSKPYVGMVKQPTSEQ+EFTMSSE
Sbjct: 173 TGTPPLLDLSEFPSLTNARGGQNDQSLPQSNALQPPGSKPYVGMVKQPTSEQTEFTMSSE 232

Query: 423 DFPAL 437
           DFPAL
Sbjct: 233 DFPAL 237


>UniRef50_Q94547 Cluster: Regulator of gene activity; n=3;
           Sophophora|Rep: Regulator of gene activity - Drosophila
           melanogaster (Fruit fly)
          Length = 585

 Score = 74.5 bits (175), Expect = 2e-12
 Identities = 45/70 (64%), Positives = 47/70 (67%), Gaps = 9/70 (12%)
 Frame = +3

Query: 255 TSTPPLLDLSEFPSLT-ARGAGDQXXXXXXXXX--GSKPY------VGMVKQPTSEQSEF 407
           TSTP LLD +EFPSLT ARG  DQ           GSKPY       GMVKQPTSEQSEF
Sbjct: 154 TSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSFGMVKQPTSEQSEF 213

Query: 408 TMSSEDFPAL 437
           TMS+EDFPAL
Sbjct: 214 TMSNEDFPAL 223


>UniRef50_Q5TT44 Cluster: ENSANGP00000026958; n=2; Culicidae|Rep:
           ENSANGP00000026958 - Anopheles gambiae str. PEST
          Length = 537

 Score = 71.3 bits (167), Expect = 2e-11
 Identities = 45/71 (63%), Positives = 46/71 (64%), Gaps = 10/71 (14%)
 Frame = +3

Query: 255 TSTPPLLDLSEFPSLT-ARGA-GDQXXXXXXXXX--GSKPY------VGMVKQPTSEQSE 404
           T TPPLLDLSEFPSLT ARG   DQ           GSKPY       GMVKQPTSEQ  
Sbjct: 156 TGTPPLLDLSEFPSLTNARGGQNDQSLPQSNALQPPGSKPYGKSVAHFGMVKQPTSEQIA 215

Query: 405 FTMSSEDFPAL 437
           FTMS+EDFPAL
Sbjct: 216 FTMSNEDFPAL 226


>UniRef50_Q9NZN8 Cluster: CCR4-NOT transcription complex subunit 2;
           n=58; Eumetazoa|Rep: CCR4-NOT transcription complex
           subunit 2 - Homo sapiens (Human)
          Length = 540

 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
 Frame = +3

Query: 273 LDLSEFPSLTAR----GAGDQXXXXXXXXXGSKPYVGMVKQPTSEQS-EFTMSSEDFPAL 437
           LDLS+FP+L  R    G+G+          G  PYVGMV +P +EQS +F++ +EDFPAL
Sbjct: 225 LDLSDFPALADRNRREGSGNPTPLINPLA-GRAPYVGMVTKPANEQSQDFSIHNEDFPAL 283


>UniRef50_Q4TC75 Cluster: Chromosome undetermined SCAF7048, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF7048,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 560

 Score = 46.0 bits (104), Expect = 9e-04
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
 Frame = +3

Query: 273 LDLSEFPSL---TARGAGDQXXXXXXXXXGSKPYVGMVKQPTSEQS-EFTMSSEDFP 431
           LDLS+FP+L   + R A            G  PYVGMV +P+ EQS +F++ +EDFP
Sbjct: 273 LDLSDFPALADRSRRDAASNPAPLPNPLAGRAPYVGMVTKPSGEQSQDFSIHNEDFP 329


>UniRef50_UPI0000E45BD8 Cluster: PREDICTED: hypothetical protein
           isoform 1; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: hypothetical protein isoform 1 -
           Strongylocentrotus purpuratus
          Length = 412

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
 Frame = +3

Query: 270 LLDLSEFPSLTA-RG-------AGDQXXXXXXXXXGSKPYVGMVKQPTSEQSEFTMSSED 425
           +LD ++FP L   RG       +G+          G   YVGMV +      EF M SED
Sbjct: 105 ILDSTDFPVLAGTRGRQTGESSSGNVSLFQPNPMAGRPAYVGMVSKQAEPTPEFQMQSED 164

Query: 426 FPAL 437
           FPAL
Sbjct: 165 FPAL 168


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,177,388
Number of Sequences: 1657284
Number of extensions: 9012972
Number of successful extensions: 17758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17734
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)