Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0359.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    32   0.38 
03_02_0177 - 6185091-6185355,6185468-6185524,6185725-6186089,618...    29   2.7  
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803...    29   2.7  
05_03_0679 + 16879370-16879400,16879586-16879716,16880178-168802...    28   6.2  
03_05_1050 - 29966031-29966076,29966180-29966232,29966420-299668...    28   6.2  
03_01_0288 + 2230927-2231631,2231735-2231907,2232047-2232188           28   8.2  
02_01_0140 + 1014594-1016048                                           28   8.2  

>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +2

Query: 284 RISITNSKRRG*PSTHYSTTTSGL*TLCWYGEAADIGTIRIYNVFGRFSGVT 439
           R S +N  R+G P    +TT+S L     YG AA++ TI+   +  R +G+T
Sbjct: 288 RSSSSNQSRQGTPPATNATTSSYLPEPIVYGRAAEMETIKQLIMSNRSNGIT 339


>03_02_0177 -
           6185091-6185355,6185468-6185524,6185725-6186089,
           6186180-6186332,6186422-6186655,6190532-6190978,
           6191549-6191652,6192240-6192351
          Length = 578

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 137 PSVCKSSLTKQRSSRCH*WGTPPXIAVEL 51
           PS  K ++ ++  SRCH W  PP I +EL
Sbjct: 455 PSTVKFNV-REPCSRCHGWSVPPLIYLEL 482


>02_05_0970 -
           33179180-33179210,33179297-33179441,33180307-33180362,
           33180650-33180691,33180814-33180866,33181059-33181490,
           33181630-33181707,33181785-33181870,33183588-33183689,
           33183754-33183960,33184976-33185336,33185463-33185626,
           33185709-33185817,33186468-33186485
          Length = 627

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +3

Query: 276 DLSEFPSLTARGAGDQXXXXXXXXXGSKPYVGMVKQPTSEQSEFTMSSEDFPAL 437
           D+S+FP LT R +              K  VG V     +  EF++ +EDFPAL
Sbjct: 265 DMSDFPQLTGRPSSAGGPQGQYGSL-RKQGVG-VNTIVQQNQEFSIQNEDFPAL 316


>05_03_0679 +
           16879370-16879400,16879586-16879716,16880178-16880255,
           16880582-16880626,16880727-16880765,16881260-16881356,
           16881528-16881937
          Length = 276

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 73  GVPHQWHLELRCLVNELLQTEGYTMPTTLSQA 168
           G  H+WH++ RC+ N+     G+     +S+A
Sbjct: 142 GTAHRWHVKARCISNQNAIALGHLKVRCISEA 173


>03_05_1050 -
           29966031-29966076,29966180-29966232,29966420-29966845,
           29966983-29967060,29967135-29967220,29969054-29969155,
           29969221-29969427,29970528-29970885,29971011-29971174,
           29971258-29971366,29971595-29971600
          Length = 544

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 276 DLSEFPSLTARGAGDQXXXXXXXXXGSKPYVGMVKQPTSEQSEFTMSSEDFPAL 437
           D+++FP LT R +              K  VG V     +  EF++ +EDFPAL
Sbjct: 260 DMNDFPQLTGRPSSAGGPQGQYGSL-RKQGVG-VNTIVQQNQEFSIQNEDFPAL 311


>03_01_0288 + 2230927-2231631,2231735-2231907,2232047-2232188
          Length = 339

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 304 AVSDGNSLRSRSGGVDVHHLHQKLNGSCCQR 212
           A SDGN     + G D HH H   +G C  R
Sbjct: 68  ACSDGNLAALGASGDDDHHHHLPPSGKCAPR 98


>02_01_0140 + 1014594-1016048
          Length = 484

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 83  WGTPPXIAVELRPGDKAPPKVGV 15
           WG  P   V+LRPG  A  K GV
Sbjct: 397 WGETPCAFVKLRPGAAAAAKAGV 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,106,091
Number of Sequences: 37544
Number of extensions: 265637
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)