Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0359.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)                    29   3.6  
SB_15582| Best HMM Match : fn3 (HMM E-Value=3.8e-13)                   29   4.8  
SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)                28   6.3  

>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
          Length = 922

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +2

Query: 242 VKVVNINTTTSGPKRISITNSKRR-G*PSTHY-STTTSGL*TLCWYGEAADIGTIRIY 409
           +KV N + T  GP+++S+TNSK   G   T + S+ TS +  +   G  + + T  +Y
Sbjct: 295 IKVGNESITPVGPRKLSLTNSKSSVGSRRTSFTSSETSSVSKVGSVGNISRLSTQEVY 352


>SB_15582| Best HMM Match : fn3 (HMM E-Value=3.8e-13)
          Length = 227

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = +2

Query: 221 TTTIQFLVKVVNINTTTSGPKRISITNSKRRG*PSTHY-----STTTSGL*TLCWYGEAA 385
           T   ++ VKV   N    G     I  ++++G PS  +     +TTTS   TL W     
Sbjct: 100 TKNTEYTVKVTARNIVGYGEAGTRIIQTRKQGPPSLPFLKPVDNTTTSEEITLEWSKPDE 159

Query: 386 DIGTIRIYNVF 418
           + GTI+ Y V+
Sbjct: 160 NGGTIQAYIVY 170


>SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)
          Length = 517

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 206 GSTLATTTIQFLV-KVVNINTTTSGPKRISITNSKRRG*PSTHYSTTTSG 352
           G  + + TI  L  K  N + TT+GP RIS+ + K +       + +TSG
Sbjct: 151 GGLVGSPTIARLCGKHENFSLTTNGPMRISLVSDKHQAYSGFRATYSTSG 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,126,251
Number of Sequences: 59808
Number of extensions: 301720
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)