Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0359.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.9  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 274 RSGGVDVHHLHQKLNGSCCQ 215
           R+GGV+  H HQ+  G+  Q
Sbjct: 14  RNGGVEHPHQHQQHYGAAVQ 33


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 552 RTRQDAXKGIQXXS*RQSNKHYPXYNXYQN 641
           RT ++  K  +  S   +N  Y  YN Y N
Sbjct: 70  RTERETSKEPKIISSLSNNYKYSNYNNYNN 99


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 552 RTRQDAXKGIQXXS*RQSNKHYPXYNXYQN 641
           RT ++  K  +  S   +N  Y  YN Y N
Sbjct: 70  RTERETSKEPKIISSLSNNYKYSNYNNYNN 99


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 392 RCRLLHHTNIGFRARRW 342
           RC  +HH    F A+ W
Sbjct: 72  RCSDVHHFESSFNAQSW 88


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 360 PYVGMVKQPTSEQSEFTMSSE 422
           PYV +++QP S+   F    E
Sbjct: 45  PYVEIIEQPASKALRFRYECE 65


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 360 PYVGMVKQPTSEQSEFTMSSE 422
           PYV +++QP S+   F    E
Sbjct: 45  PYVEIIEQPASKALRFRYECE 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,830
Number of Sequences: 438
Number of extensions: 2664
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)