Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0359.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ...    30   1.7  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   9.0  

>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
           Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
           (GI:1658504) [Drosophila melanogaster]
          Length = 444

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +3

Query: 261 TPPLLDLSEFPSLTAR--GAGDQXXXXXXXXXGSKPYVGMVKQPTSEQS-EFTMSSEDFP 431
           T P    ++FP LT+R   AG Q         GS+   G+   P  +Q+ EF++ +EDFP
Sbjct: 130 TSPFDINNDFPQLTSRPSSAGSQGQL------GSRLKQGLGISPIVQQNQEFSIQNEDFP 183

Query: 432 AL 437
           AL
Sbjct: 184 AL 185


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 1    VSGHVTPTFGGALSPGRNSTAMXGGVPHQWHLELRCLVNELLQTE 135
            V G      GGA   G+    + G +PH WH+     V+E+L+ +
Sbjct: 2794 VGGRAWAYGGGAW--GKEKVRVTGNLPHPWHMWKLDSVHEILKRD 2836


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,430,507
Number of Sequences: 28952
Number of extensions: 197540
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)