Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0358.Seq
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 174 1e-44
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 69 5e-13
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 64 2e-11
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 30 0.40
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 26 6.6
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 6.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 174 bits (423), Expect = 1e-44
Identities = 89/148 (60%), Positives = 112/148 (75%)
Frame = -3
Query: 700 RFPWXS*NADLR*VSQ*NIGAVPRDCHFFIPGFAPSDVTRESAVPCADGARKLTQQMFDA 521
RFP N+DLR ++ N+ PR HFF+ GFAP S+ A +LTQQMFDA
Sbjct: 241 RFPGEL-NSDLRKLAV-NMVPFPR-LHFFMVGFAPLAAIGSSSFQ-AVSVPELTQQMFDA 296
Query: 520 KNMMRLANPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDI 341
NMM A+PRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +
Sbjct: 297 NNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSV 356
Query: 340 PPRGLKMSATFIGNSTAIQELFKRISEQ 257
PP+ LKMSATFIGNST+IQE+F+R+ +Q
Sbjct: 357 PPKDLKMSATFIGNSTSIQEIFRRLGDQ 384
Score = 91.5 bits (217), Expect = 1e-19
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = -2
Query: 254 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 132
+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 386 SAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 69.3 bits (162), Expect = 5e-13
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Frame = -3
Query: 703 LRFPWXS*NADLR*VSQ*NIGAVPRDCHFFIPGFAPSDVTRESAVPCADGARKLTQQMFD 524
LRF S N DL Q N+ PR HF + +AP V+ A ++ +++T Q F+
Sbjct: 242 LRFE-GSLNVDLA-EFQTNLVPYPR-IHFPLVTYAPI-VSAAKAFHESNSVQEITNQCFE 297
Query: 523 AKNMMRLANPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCD 344
N M +PR GRY+ ++RG + ++V + I+ K + FV+W P K +CD
Sbjct: 298 PYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICD 357
Query: 343 IPPRGLKMS--------ATFIGNSTAIQELFKRISEQ 257
PP+ ++ S + N+T+I E + R+ +
Sbjct: 358 RPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHK 394
Score = 47.6 bits (108), Expect = 2e-06
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = -2
Query: 248 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 138
M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 64.1 bits (149), Expect = 2e-11
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Frame = -3
Query: 703 LRFPWXS*NADLR*VSQ*NIGAVPRDCHFFIPGFAPSDVTRESAVPCADGARKLTQQMFD 524
LRF S N DL Q N+ PR HF + ++P V+ A ++ +++T Q F+
Sbjct: 246 LRFA-GSLNVDLN-EFQTNLVPYPR-IHFPLVTYSPI-VSAAKAFHESNSVQEITNQCFE 301
Query: 523 AKNMMRLANPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCD 344
N M +PR GRY+ ++RG + ++V + +I+++ + FV+W P K +C
Sbjct: 302 PYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICY 361
Query: 343 IPPR--------GLKMSATFIGNSTAIQELFKRISEQ 257
PP+ + + + N+T+I E + R+ +
Sbjct: 362 EPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHK 398
Score = 47.6 bits (108), Expect = 2e-06
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = -2
Query: 248 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 138
M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 402 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -3
Query: 463 VFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIG--NSTA 290
V+ + ++ + + +MNI+ N S W+PN + +P G K+S I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 289 IQELFK 272
+EL++
Sbjct: 403 KEELYE 408
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 484 RYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPN 368
+Y+ +VF G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = -3
Query: 631 RDCHFFIPGFAPSDVTRESAVPCADGARKLTQQMFDAKNMMRLANPRHGRYL 476
R H F+P F P +T E P + + +++ + N RYL
Sbjct: 9 RPNHIFLPKFRPDKITSECNTPQQQNV--IAEGLYNVSEPFPIRNTDEERYL 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,587
Number of Sequences: 5004
Number of extensions: 48040
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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