Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0358.Seq
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 467 RCLPRSHVYEGGGRTNDEHSE 405
           +C+   H+   GG  ND H+E
Sbjct: 300 KCVSGEHLSVSGGALNDCHAE 320


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 461 LPRSHVYEGGGRTNDEHSEQELVVL 387
           LPR  + E   +  DE  E+E+VV+
Sbjct: 345 LPRFLLIERPKKDEDEEEEEEVVVV 369


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -3

Query: 511 MRLANPRHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYF 386
           MRL++P HG  L     +   +  K +  ++   ++K   +F
Sbjct: 355 MRLSHPLHGNLLPPGVCYTCDVCGKTLSTKLTLKRHKEQQHF 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,814
Number of Sequences: 438
Number of extensions: 3376
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)