Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0357.Seq
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    30   0.32 
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.55 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   3.0  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    27   3.9  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.8  

>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -3

Query: 346 AAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFLMTLLAFPQPPIITSYIGSDSCGPVVSA 167
           AA  T      FP       F   +  + S+F+++LL     P +TSY G D+   V++ 
Sbjct: 292 AAAETENPAKAFPVAVRQTLFRIAIFYILSLFIVSLLISGADPRLTSYHGVDASPFVLAI 351

Query: 166 MWASFAAL 143
             A+  AL
Sbjct: 352 KDANIKAL 359


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 399 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 307
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 270 IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSE 431
           + L +    F   G   V G V +A+   +  RVK   ++LG  P +   T SE
Sbjct: 564 VELSISKNIFFIGGGKAVHGLVNLASSRNVSDRVKCMVNFLGTEPLVGLKTASE 617


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 449 ATGSWKIEVPPTAPVAAALYQPPLATLEATEETYPLRLEEPVY 577
           ATG+W   + P           P+A ++ T E Y   L  PVY
Sbjct: 204 ATGAWTASLLPNDHTRFLATGQPVAYIKLTPEEYIRFLTNPVY 246


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 210 VMIGGWGNAKSVIRKIEPSPIRLKLKAPEF 299
           V + GW  AKS+I K+ PS  RL    P F
Sbjct: 57  VFLTGWA-AKSIIVKLLPSLWRLSTLIPSF 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,053
Number of Sequences: 5004
Number of extensions: 69260
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)