Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0357.Seq
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 35 0.062
01_01_0142 + 1312236-1312601,1313140-1313274 34 0.14
02_04_0452 + 23044190-23045227 32 0.44
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 31 0.77
06_03_0683 - 23490215-23490997 31 1.0
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 1.0
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 3.1
06_01_0172 + 1362101-1363708 29 4.1
07_03_1536 - 27537394-27537576,27537837-27538073,27538164-275390... 29 5.4
07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598... 29 5.4
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 9.4
11_02_0015 - 7355989-7357092 28 9.4
05_05_0226 + 23442971-23443857,23444209-23446324 28 9.4
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 35.1 bits (77), Expect = 0.062
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 275 VEIESPGILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTGW 445
V++ G+ ++ +W+ G+IS GR W DP+P V YVG+ +
Sbjct: 88 VDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGLSSWD 147
Query: 446 GATGSWKIEVPPTAPVAAALY 508
G I + P+AP + L+
Sbjct: 148 KHVGYRNISLMPSAPQNSILW 168
>01_01_0142 + 1312236-1312601,1313140-1313274
Length = 166
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 571 GIW-VDVFREVKLPPGRPLWGRTGLLRRTSVMWLVLFT 681
G+W + + REV P G WG LL RTSV W +L +
Sbjct: 128 GVWRIGIRREV-FPSGGTAWGDDKLLARTSVTWNILLS 164
>02_04_0452 + 23044190-23045227
Length = 345
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 410 FPVYYVGVCTGWGATGSWK-IEVPPTAPVAAALYQPPLATL 529
FPV G G G W + +PP AAA +Q PL TL
Sbjct: 114 FPVPAAAGFPGGGGGGCWPWVNIPPQGAAAAASHQQPLNTL 154
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 428 GVCTGWGATGSWKIEVPPTAPVAAALYQPPLATLEAT 538
GV G G+ + +PP AP AAA+ PP+ + E T
Sbjct: 422 GVLHGKAHEGAPSMALPPPAPSAAAMLSPPVPSKERT 458
>06_03_0683 - 23490215-23490997
Length = 260
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 476 PPTAPVAAALYQPPLATLEATEETYPLRLEEPVYGLMFSG 595
PP P+AAA PP A L T + E P+Y L+F+G
Sbjct: 26 PPAKPIAAAP-PPPKAVLSDTVLAALSQHERPIYKLVFAG 64
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 299 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 409
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 287 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 424
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>06_01_0172 + 1362101-1363708
Length = 535
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 279 KLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSY--LGLIPNLSQFTTSESAQAGVP 452
KL L NI++ G VGI LDA +K+ LG+ P++ +TT SA G
Sbjct: 186 KLYITPNLVSCNILLKGLVGIG---DLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKG 242
Query: 453 QAPGKSK 473
G K
Sbjct: 243 DIEGAQK 249
>07_03_1536 -
27537394-27537576,27537837-27538073,27538164-27539078,
27540028-27540282,27540872-27540940,27542743-27542805,
27542833-27542901,27542962-27542997
Length = 608
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 467 IEVPPTAPVAAALYQPPLATLEATEETYP 553
++ PP APVA Q PLA L+ T + P
Sbjct: 108 VDEPPGAPVARLQAQRPLAPLQVTTQAPP 136
>07_01_0776 +
5983684-5983857,5983962-5984072,5984151-5984302,
5984403-5984460,5984568-5984616,5984714-5984958,
5985129-5985206,5986016-5986246
Length = 365
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 401 PEPFPVYYVGVCTGWGATGSWKIEVP-PTAPVAAA 502
P PFP+Y+ G + A S VP PTA AA
Sbjct: 73 PVPFPMYHPGAAAAYYAHASMAAGVPYPTAEAMAA 107
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -1
Query: 396 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 292
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>11_02_0015 - 7355989-7357092
Length = 367
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 249 RKIEPSP-----IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHS 386
R+ +P P +RL LKA ++ T+ G + ALS LD RV F S
Sbjct: 13 RRTKPKPPMSRLMRLSLKAVDWATDATRRADGTLNRLALSVLDPRVPAFSS 63
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 692 LAPFVNSTSHITEVLLSSPVL 630
L PFVN S +TE+ +SSP+L
Sbjct: 802 LPPFVNLLSGLTELCISSPML 822
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,388,351
Number of Sequences: 37544
Number of extensions: 534408
Number of successful extensions: 1578
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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